Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01161 ATGGCGTTGTCGGTCGAGAAAACCAGAGCAGGCCGTGAGTACAAGGTCAAGGACATGTCTCAGGCTGACTTTGGTCGTCTCGAGATTGAACTCGCCGAGGTTGAGATGCCGGGTCTCATGTCTTGCCGCTCCGAATTCGGCCCTTCTCAGCCCTTCAAAGGTGCCAGGATCACTGGCTCTCTCCACATGACCATTCAGACCGCCGTTCTCATTGAGACACTCACCGCCCTCGGCGCCGAGGTCCGCTGGTGCTCCTGCAACATCTTCTCTACCCAGGACCACGCCGCCGCCGCTATTGCTCGTGATAGCGCCGCCGTGTTCGCCTGGAAGGGGGAGACGCTCCAGGAGTACTGGTGGTGTACTGAGCGGGCTTTGGATTGGGGTCCCGGTGGTGGTCCCGATCTGATTGTGGACGATGGTGGTGACGCTACGCTTTTGATTCACGAGGGAGTTAAGGCCGAGGAGATCTATGAGAAGTCTGGGCAGCTTCCCGATCCCACTTCTACTGACAATGTAGAGTTCCAACTTGTCTTGACGATCATCAGAGATGGGCTCAAGACTGATCCCAAGAGGTACCACAAGATGAAGGATAGATTGGTTGGGGTCTCAGAAGAGACTACTACTGGGGTGAAGAGGCTTTACCAGATGCAGAACATTGGCACCTTGTTATTCCCTGCTATTAATGTCAACGATTCTGTCACCAAGAGCAAGTTCGATAACTTGTATGGATGCCGCCACTCCCTTCCAGACGGGCTGATGAGGGCGACTGACGTCATGATTGCTGGAAAGGTAGCTGTGGTCTGTGGTTATGGAGATGTTGGCAAGGGCTGCGCGGCTGCCCTCAAGCAAGCTGGAGCTCGTGTAATCGTCACAGAAATTGACCCAATTTGTGCCCTTCAGGCTCTTATGGAAGGCCTTCCAATCCTTACATTAGAAGACGTAGTAGCTGAGGCAGACATTTTTGTTACTACCACCGGAAACAAAGACATCATCATGGTAGACCACATGAAGAAAATGAAGAACAATGCCATTGTTTGCAACATTGGCCACTTTGATAATGAAATTGATATGCATGGGCTGGAGACTTACCCTGGTGTAAAGCGCATTACAATCAAGCCTCAAACCGACAGGTGGGTCTTCCCCGAAACGAACACAGGCATCATTGTATTGGCGGAGGGACGTCTCATGAACTTGGGTTGTGCCACAGGCCACCCTAGTTTTGTGATGTCGTGCTCTTTCACAAACCAGGTGATTGCCCAGCTCGAGCTATGGAAAGAGAAGGGAAGCGGAAAGTACGAGAAGAAGGTCTATGTTTTGCCGAAGCACCTTGATGAGAAAGTGGCTGCTCTTCACCTTGCCAAGCTCGGAGCCAAGCTCACCAAGCTGTCCAAAGATCAGGCGGACTACATCAGCGTGCCTGTGGAAGGGCCATACAAGCCTGCCCATTACCGATACTGA 1458 52.26 MALSVEKTRAGREYKVKDMSQADFGRLEIELAEVEMPGLMSCRSEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKSGQLPDPTSTDNVEFQLVLTIIRDGLKTDPKRYHKMKDRLVGVSEETTTGVKRLYQMQNIGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQAGARVIVTEIDPICALQALMEGLPILTLEDVVAEADIFVTTTGNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFPETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKGSGKYEKKVYVLPKHLDEKVAALHLAKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29994211 29995970 - Bma019896.1 Bma04g01161 81530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01161 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 379 485 - -
Bma04g01161 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Bma04g01161 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Bma04g01161 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 - -
Bma04g01161 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Bma04g01161 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Bma04g01161 485 CDD SAHH 23 473 IPR000043 -
Bma04g01161 485 TIGRFAM ahcY: adenosylhomocysteinase 14 477 IPR000043 -
Bma04g01161 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
Bma04g01161 485 Gene3D - 243 404 - -
Bma04g01161 485 PIRSF SAHH 2 485 IPR000043 -
Bma04g01161 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
Bma04g01161 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Bma04g01161 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 IPR000043 -
Bma04g01161 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 279 IPR020082 -
Bma04g01161 485 SMART AdoHcyase_2 13 484 IPR000043 -
Bma04g01161 485 Gene3D - 15 485 IPR042172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01161 K01251 AHCY, ahcY; adenosylhomocysteinase [EC:3.13.2.1] - mnt:21409482 927.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01161 Bma06g01269 CCT
Bma02g00942 Bma04g01161 CCT
Bma02g00942 Bma04g01161 ECH
Bma04g01161 Bma05g01300 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01197 Bma-Chr2:54069584 Bma04g01161 Bma-Chr4:29994211 0 dispersed
Bma06g01269 Bma-Chr6:49798578 Bma04g01161 Bma-Chr4:29994211 0 transposed
Bma04g01161 Bma-Chr4:29994211 Bma05g01300 Bma-Chr5:52315544 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g219 . . . . . . Bma04g01161 . Cmo08g01262 . . . . . . . . . . . . . . . Cla06g00403 Cam06g0425 Cec06g0432 Cco06g0432 Clacu06g0411 Cmu06g0411 Cre06g1191 . Cone15ag0704 . . . . . . . . . . . . Bma02g00942 . Sed09g0625 . . Cma08g01298 . . . . . Bhi12g01972 Tan06g2803 Cmetu11g0409 . . . Lcy12g0891 . . . . . . . . . . .
Vvi5g915 Blo01g00338 Blo12g00101 . Bda08g00043 Bpe04g01085 . Bma04g01161 Bma05g01300 . Cmo17g00096 Cma06g01198 Cma14g01913 . . Sed02g1534 Cpe08g00415 Cpe03g01611 Bhi01g00191 Tan10g0486 Cmetu06g1562 . Hepe05g1781 . Lcy11g1796 Cla06g00769 Cam06g0819 Cec06g0832 Cco06g0838 Clacu06g0820 Cmu06g0794 Cre06g1575 . . . . Lsi05g01864 . Chy05g00572 Cme06g00362 . . Bda11g00666 . Bpe05g01148 Bpe13g00872 . Bma06g01269 Sed09g0173 Cmo06g01235 Cmo14g01966 . Cma17g00091 . . Cpe12g00083 . Bhi12g01487 Tan06g2289 Cmetu05g0404 . Hepe03g0372 . . Cla05g00325 Cam05g0355 Cec05g0357 Cco05g0361 Clacu05g0351 Cmu05g0337 Cre05g0399 Lsi09g01129 Csa03g01072 Chy06g00342 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001274 4 2 3 4 3 2 0 2 2 2 2 2 5 2 2 4 2 4 3 2 2 2 3 1 3 2 2 5 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01161 Bma_Chr04 FPKM 5.664093 5.140362 5.232876 2.104858 1.665815 0.785178 1.34759 0.617969 0.585533 0.713673