Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01163 ATGGGCTCTGTCGTTCTTCCTTCCTCACACTTCTCTCTTTCTCTCCAAGCTTCAACCATGGTCATCGCCACCGAAGAGAGCGTGATCAGGAAGACCGGACTGACTTCTGTCGGCCCCGGAAAGATGAGCGGAACGGACGTCGTGCATGAGCCGAGCGGTCTGGATCTCAGCACGAAGCTCCATTACCTGAGGGGAGTGTACTTCTTCAGAATCGAGGCGTTGAGAAACCTGCCCATGAAGAAGCTGAAGGAGGCGATGTTCAACTGGTTCAACGGCTACTACATGACCTGCGGTAGGTTCAGAAGGTGGGACTCCGGCCGGCCGTACATCAAATGCAATGACAGCGGGGCGAGGTTCGTGGAGGCGGAATGCGATCTGACGATAGAGGAGTGGCTGGAGAAGAAGGACTGGTCTGCGCAGACTCTCCTCTTTCCGCAGCAAGTCATTGGACCCGAACTTGCCTTCTCTCCTGCTCTTCTCTTTCAGCACACTACATTCAAATGTGGTGGAATTTCACTGGGTCTGAGCTGGTCCCACGTTCTCGGAGACATATACTCCTTCGCAGAATTCATGAACTCCTTGACCCATTTCCTTCCAGGTTCCCGACCTACCAAGTCTCCGACCACCATTCCCAAACCCATCTCCGAATCTGAAATACCCAAGAACCCACCTTCTATGGAGAGGGATCCAGTTTCCCTCAAACGGGTCGACCCGGTCGGGGATCTTTGGACGACTGTCACCAGCTGCAAGATGGAAACCTTCTCCTTCCATTTATCTTCTGCTCATATAAAAACTCTCCGGTCAGAAACCGATCAACTTCCGCTTTTTGAATCTGTATGTGCACTTCTCTGGCATTGCATAGCCAAAGTTAGAATTGGATCAGAACCCAGAACTGTGACGATTTGCAAAGCTTCTCCAAATCGACGAACAGACGCAGCGATAGGAAACAATCAGATCACAATCAGCACAGTGGAGGCAGATTTCTCGATCAAACACGAAGACCCAAAATTATTGGCCAAATTTCTAGCTAGTAAAGCTCTAGACGAAACAACCCATATCGAAAACGCAGTTGACCAAGATAACGGGGCCACTGATTTCATAGTGTATGGAGCTAACTTGACGTTTGTGGACTGGGAAGACGTTGACTTTTACGGACTCGAGTTGAATAAACAAAAACCAGCTCTTGTTTACTGTGAAATCCAGGAAGTTGGCGAGGAAGGCGTTGTTCTGGTGCATCCATGGTCAAACAACTATAGAAAAGATGACGACGGCTGTGAAGACGGGAGATTAGTGACAGTGACTTTGCCTGAGAACCAAGTGTCGGAGCTGAAATCTGAGTTGCTAATGCAGGGTCTTATGTAG 1362 49.49 MGSVVLPSSHFSLSLQASTMVIATEESVIRKTGLTSVGPGKMSGTDVVHEPSGLDLSTKLHYLRGVYFFRIEALRNLPMKKLKEAMFNWFNGYYMTCGRFRRWDSGRPYIKCNDSGARFVEAECDLTIEEWLEKKDWSAQTLLFPQQVIGPELAFSPALLFQHTTFKCGGISLGLSWSHVLGDIYSFAEFMNSLTHFLPGSRPTKSPTTIPKPISESEIPKNPPSMERDPVSLKRVDPVGDLWTTVTSCKMETFSFHLSSAHIKTLRSETDQLPLFESVCALLWHCIAKVRIGSEPRTVTICKASPNRRTDAAIGNNQITISTVEADFSIKHEDPKLLAKFLASKALDETTHIENAVDQDNGATDFIVYGANLTFVDWEDVDFYGLELNKQKPALVYCEIQEVGEEGVVLVHPWSNNYRKDDDGCEDGRLVTVTLPENQVSELKSELLMQGLM 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30046488 30048155 + Bma019898.1 Bma04g01163 81532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01163 453 Pfam Transferase family 54 446 - -
Bma04g01163 453 Gene3D - 243 447 IPR023213 -
Bma04g01163 453 PANTHER PROTEIN ECERIFERUM 26-LIKE 28 445 - -
Bma04g01163 453 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 28 445 - -
Bma04g01163 453 MobiDBLite consensus disorder prediction 202 231 - -
Bma04g01163 453 Gene3D - 26 231 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01163 - - - qlo:115995181 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01163 Bma-Chr4:30046488 Bma13g00656 Bma-Chr13:16170772 4.88E-15 dispersed
Bma04g00429 Bma-Chr4:3530291 Bma04g01163 Bma-Chr4:30046488 3.46E-112 transposed
Bma04g01163 Bma-Chr4:30046488 Bma05g01296 Bma-Chr5:52301270 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g929 . Blo12g00104 Bda03g01139 . Bpe04g01082 . Bma04g01163 . . . . . . . . . . . . . . . . . Cla06g00775 Cam06g0826 Cec06g0842 Cco06g0848 Clacu06g0829 Cmu06g0801 Cre06g1582 . Cone15ag0263 . . . . Chy05g00577 . . . . . . . . . Sed04g2086 . . . . . . . . Bhi12g01477 Tan06g2283 Cmetu05g0705 Lac12g2014 Hepe03g0377 . . . . . . . . . Lsi09g01123 . . Cme05g00735
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009078 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01163 Bma_Chr04 FPKM 4.992337 5.656265 6.200292 8.667278 10.609691 10.410029 10.818787 5.890569 8.035858 6.964496