Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01164 ATGTCAAACTCATTTGGGATAAATTTGTTTGGTATTTTGAGAAGAATCAATCTATCTTTAATCAACCTGCCGTGGAGGCTACAGAATTATCAGTTGACACAGATCTGGTCAAATTCCTTCCATTCATTTGCATACCCAACGACTGATCACACTCCATCTGCAACTATATTATCCTTGCTTCTCCAATCGTTGCAAAAAATCCCCACCATAGTTGAATCTCATTCTCAGCAGATTGTGCCATTATTCTTCAAGTTTCTTGGCTATGATTGCAATCATCTTGCAAGTGTGGGATCATTTAATGTACATGCTTGTAAAGGCAAGGAATGGAAGTGTGTCCTTAAAGAATGGTTAAACTTGCTGAAGCAAATGAGGAATCCAAAGTCCTTTTACAAGAGCCAATTTCTTAAAGAAGTTTTGGAAACTAGGCTTCTAGATGAAAATGATGAAGAAATACAGATGCAGGTTCTTGATTGCCTGTTAACTTGGAAAGATGATTTTCTTATCCCGTATGCTAATCATCTAAAAAGCTTGATCAGCTCCAAAACAGTAAGAGAAGAGCTTACAAGGTGGAGTTTATCCAAAGAATATAATCAAATAGAAGAACACCACAGATCGTATCTTGTGCCTATAGTAATGCATCTCCTAATGCCAAAAATCAGAAAATTGAAGGCACTTGCTTCTCGCAAGAAAGCAAGTGTGAATAGTCGAAAGACAGTTCTTGGATTCATCTCTCAGCTTGATGTGGATGAGCTCCCTCTTTTTTTTGCTTTGTTAATGAAGCCCTTGCGTATAGTATCTGAGAAGAGTGATGATGGTGCCAATTGGCTTTGGACCTCTGAATTAAGTTTAATGAATGAGGTTTTGTTAATGAACTGCTTGAAGTTTTTCACAATAGATAACATAACAGCCCTATCATGGAAAAAGAGATACGGTTTTCTGCATGTGGTCCAAGAAATTTTTGCAGTTTTTGATGAATTTCATGTCAGACCCTTTCTTGATCTATTAATGGGGTGTGTTGTCCGGATGTTGGGAAGCTGCACTTCAAGTCTTCTATCAAATGTAAATTCTAGTTCGAGGGGTGATTGCAGTGACAATGAATGTTTTTCGGAGAAAATTGAAGAAACTGCCCATGTTGTTCTGACTAGCACTTCCGTGAAGCAGTTCAAGGATTTAAGGTCTTTATGTTTGAAAATAATATCCTTTGCTCTTGGTAAATATGAAAACCATAGCTTTGGTGATGAGTTCTGGGGCTTATTTTTCTTGTCTGTGAAGCCTTTGATCGACAGTTTCAAGCTCGAGGGTTCTAGTAGTGAGAAACCAAGTTCACTTTTTTGTTGCTTTGTTTCCATGAGCAAAAGCTACAACCTTGTACCACTACTGTCGAGGGAGAAAAATCTTATTCCAGATATATTCTCAATTCTCTCTGTCACATCCGCGTCTGAAGCTATTATATCATTTGTTCTTAATTTCATTGGGAATCTTTTGAGTCTCGATTGTGAATTAGATGGCAGAGACAATGCTATTCACAGTGTTCTACTTCCAAACATTGACTCACTCGTGTCAAACTTGCATATTCTCTTCCAAAGTAATTGTGCAAACAAGAGGAAGCTAGTGAAATCTCCAGGAGAGTCAGAGAGAAGAGTTTTTAAATTGCTTTCAAGATATATAAAGGATTCATTTCAAGCGAGAAAATTTGTTGATATTTTACTCCCATTCTTGGAAAAGAGACACTGTAATTCAGATTTCTCCATTGAGATCGTGCAAGTTTTTTGTGATGTTGCACCATTTTTAGGGAGTGAAGGTGGTAAAAAAATTTTGAGTGCAGTTTCTCCGTTGCTGATTTTTTCTGAACAAGATGTTCGCATGATTATTTGTGATATTATTGATGGTCTTGCTGCAGCTGATCCTTCTATAAAGTTTTTGGCACAACTTGTTCGAGATTTGAATGCTAGCTCTGCTATGGAAATGGGTGGTCGTGATTTTGACACAGTGGTCAGTGCTTATGAAAAAATTTGTCTGGATTTCTTTCATGGACTTCCAGTGAATCAGGCATTAGTTGTTTTATCACACTGTGTGCATGATATGTCGTCTGAAGAGTTAATTCTAAGGCACAGTGCTCGTAGAGCACTGCTTTCATTTGTTGAATTTTCTTCCGTAATTCTTAGTCAAGCAGCAGCAGATGATGGTGAGATGACATCCTCACATTGGACAAAGGCTTCTATTTTGCATGTGACAAACAAATTTCTTTTTAAGCATATGGGAGAAGCTATGAGTAAAGAATCTTCTGTAAAAAAGGAATGGATTAACCTATTACGAGAGATGGTGTTGAAACTTCCAGAGTTAGAAACCCTTGATTCATTAAAAGCTTTATGCAGTAAAGACGCTGAAGTTGATTTCTTCAACAATATTACTCATTTACAGAGGCATAGGAGAGCAAGGGCTCTTACTCGCTTTAAGAGTGTGATTACTACTGTCAATATGTCTGAGGTCATCACATCAAATGTATTTGTTCCGTTTTTTTTCAATATGCTATTTGATGAAGAAGGCAAAGCAGAACATGTTAGAGTTGCATGTATAGAGGCACTTGCTTCAATTTCTGGGTGTATGGAATGGAAGTCATATTATGCTCTACTGCGGAGAAGCTTTCGGGAGTTGACTGTAAAGCTCAATAAGCAAAAAGTTTTGTTGCGGTTGATCTGCTCAATTTTGGATCATTTCCATTTTACAGAGAGTAATTCTGACACAATGACCGAGATACAAAATTGCCTTAGTAATGCTGTTCTGCCAAAGCTAAAAATGTATATGAACTATGAGTCAGATAATATTGATGTCAACATCAATCTGGCTGCACTGAAAGTATTAAAATTACTTCCAGGAGATGTTATGGACTCACAGTTGATGGGTATCATTCAGCATGTTACAAACTATTTGAAGCACCGTTTAGAAAGTGTACGTGATGGTGCTAGATCTGCTTTGGCTGCATGCCTGAAAGAACTTGGGTTGGAGTACTTGCAGATAATAGTTAAGGTGATGCGAAGTACATTGAAGCGAGGATTTGAGATGCATGTATTGGGGTATACACTTAATTTCATTTTGTCAAAGTTCTTTCTGAATCCAATTTGTGGCAGTTTGGATTATTGTCTGGAACATCTTCTTTCTATAGTAGAGAAAGATATTAGTGGAGAGGTTGCTGAGGAAAAAGACGTTGAAAAGATTGCTTCGAAAATGAAAGAGACAAGAAAACAAAAGTCTTACGATACCCTGAAAATGATTGCCCAAAACATAACATTCAAAGCTCATGCATCGAAGCTTCTAGCTCCTGTTACAAATAATTTGCAGAAGCATCTAACACCAAAAGCCAAAATGAAATTGGAAATGATGCTAAGTAGCATAGCTGCTGGCCTTGAAAGCAATCCATCAGTTGATCAAACAGATTTGTTTATCTTTATATATGGCCTTATTGAAGATGGGGTTAAAAATGAAAGCGGTCAGGGTAAGAATTCATCTTTGGCTGAACCATTAAAAAAATGCAGAAAGGTTGTCAGTGAGAATATCAGAACTCCTCGTCGTGCATTTCTTGCTGACTCACCATGTTCACATCTGATTATGGGATTTGCTCTTAAGGTATTGCATGGGCGTGTAAAGAAGTTGAAATTGGGGGAAAGAGATCAACAATTGCTATCAATGTTAGACCCTTTTGTGACTCTTTTAGGCAAATGTTTGATTTCCAAGTATGAGGATGTTTTGTCAACATCCCTCAAATGCCTAACTCCTCTGGTGAGACTCCCTTTACCATCCATCAAATCTCAAGCTGATCAAATGAAGGCAGTGCTAATGGATATTGCTCAAAGCTCAATAGATCCCAACAGTCCTTTGATGCAATCTTGTCTGACATTGTTGATTGTGCTTCTGAGAAGTACTGAAATTACTCTCTCATCAGATCAATTGCGGCTATTAATTCAATTTCCATTGTTTGTTGATCTGGAAAAAAATCCCACGTTTATTGCTCTTTCACTTTTGAAGTCCATCATTAGCCGAAAACTGGTTGCCCCTGAGATATATGATCTTTCAACACGGGTTGCAGAGTTGATGGTGACTAGTCAAGTAGAATCGGTACGTAAGAAATGCAGCAAAATTTTGTTGCAATTCTTACTCGATTACCCACTGTCAGACAAACGGTTGCAACAGCATATAGATTTTTTGCTATCTAATTTAAGGTATGAGCACTCAACTGGAAGGGAAGCTGTTCTTGAAATGCTCCATACTATTCTCATAAAGTTTCCGAAAAGTGTTGTGGATGAGTTATCACAGACTTTATTTCTTCATTTGGTAGTCTGCTTGGCTAATGATCAGGATAATAATGTTCGTTCCATGACTGGTGCTGTGATAAAATCTCTTATTGGTCGTATAAGCCCACATTTGCTCAATGCTATCCTTGATTACAGTCTATCTTGGTATATGGGTGCAAAGAAGCAGCACCTGAAGAGTGCAGCAGCTCAGGTCCTGGGATTACTGGTTGAAGTTCAAAAGAGAGGCTTTGAAAAACATGTCAGAAAGGTTTTGTCGGTGACTGTAGAAGTTTTGCAGTCTGCCGTAAATGCTAATACCAATAATGAATCAAGTTCTTCTGTTGAAGCTAATATTCCTTTTTGGAATGAAACATATTATTCACTCGTAATGCTGGAGAAAATGCTGCCCCATTTCCATGAGTTATACTCGGAGAAGGATCTTGAGGATTTATGGGAACTGATATGCAAGTTGCTGTTGCACCCACATACATGGTTACGCAACATTTCTAATCGCTTGATAGGCTCATACTTCACGATAGTAACAGCTAAAGAAGGCGATCCTGAAAAATTATTTAAAACTCATCTTCTCTTTCAGCCATATAGACTTTGTCTTATTGCTGCTTCCCTCTGCTGCCAACTGAAGACTCAGCTTATTGATGATGTGGTTGGTAGCGGAATTGCACAAAATCTTGTTGTTGCACTTTTCAGTGTGCACACTTTCATGGCGAAGATGGAGAAATCTGATTCACTAATTTACTGGTCAACTCTTGAACAACATGAGCAAACATGTTTTCTTGATGCTTTTCAGTTGCTCGATTCGAGAAAAGGAAGAAATATGTTTTTGTCTCTAACATCTGGTATATGTGACCCAAATGACGAAGTTCTTGATAGAGAAATCAGTTACTTTATTGTCTCAAATTTACTCAGACAGATGGGGAAAATAGCCCTTCAACGAGACACTATCCAGATGAAAATCGTTTTTGAAACTTTTAGCAAATTTTCTTCACAAGTTGGTCCAGATGATTTTCAGCATTATGCGCATCCAATCTTGCTCCCTTTGTACAAAGTTCGTGAAGGTTTTGCCGGAAAAGTTATACCAGATGATGTAAATCAAGTGGCTCAGGAAGTTTGTGAAAGTATTCAGAAGTGTTGGGGAATCCAGAATTTTGTTCAAGTTTATACTCAGATAAAGAAAGGTCTCAAGGAAAAGAGGGACAAGAGGAAGCAAGAAGAAAAGCGAATGGCCGTTGTCAATCCCATGCGCAACGCCAAGCGGAAATTGCGGATTGCAGAAAAAAACCGAGCCAACAAGAGGCGGAGAATGGCGACCATGAAAATGTCGAGATGGGTCGGATTAAAGCATGCTTGA 5658 38.14 MSNSFGINLFGILRRINLSLINLPWRLQNYQLTQIWSNSFHSFAYPTTDHTPSATILSLLLQSLQKIPTIVESHSQQIVPLFFKFLGYDCNHLASVGSFNVHACKGKEWKCVLKEWLNLLKQMRNPKSFYKSQFLKEVLETRLLDENDEEIQMQVLDCLLTWKDDFLIPYANHLKSLISSKTVREELTRWSLSKEYNQIEEHHRSYLVPIVMHLLMPKIRKLKALASRKKASVNSRKTVLGFISQLDVDELPLFFALLMKPLRIVSEKSDDGANWLWTSELSLMNEVLLMNCLKFFTIDNITALSWKKRYGFLHVVQEIFAVFDEFHVRPFLDLLMGCVVRMLGSCTSSLLSNVNSSSRGDCSDNECFSEKIEETAHVVLTSTSVKQFKDLRSLCLKIISFALGKYENHSFGDEFWGLFFLSVKPLIDSFKLEGSSSEKPSSLFCCFVSMSKSYNLVPLLSREKNLIPDIFSILSVTSASEAIISFVLNFIGNLLSLDCELDGRDNAIHSVLLPNIDSLVSNLHILFQSNCANKRKLVKSPGESERRVFKLLSRYIKDSFQARKFVDILLPFLEKRHCNSDFSIEIVQVFCDVAPFLGSEGGKKILSAVSPLLIFSEQDVRMIICDIIDGLAAADPSIKFLAQLVRDLNASSAMEMGGRDFDTVVSAYEKICLDFFHGLPVNQALVVLSHCVHDMSSEELILRHSARRALLSFVEFSSVILSQAAADDGEMTSSHWTKASILHVTNKFLFKHMGEAMSKESSVKKEWINLLREMVLKLPELETLDSLKALCSKDAEVDFFNNITHLQRHRRARALTRFKSVITTVNMSEVITSNVFVPFFFNMLFDEEGKAEHVRVACIEALASISGCMEWKSYYALLRRSFRELTVKLNKQKVLLRLICSILDHFHFTESNSDTMTEIQNCLSNAVLPKLKMYMNYESDNIDVNINLAALKVLKLLPGDVMDSQLMGIIQHVTNYLKHRLESVRDGARSALAACLKELGLEYLQIIVKVMRSTLKRGFEMHVLGYTLNFILSKFFLNPICGSLDYCLEHLLSIVEKDISGEVAEEKDVEKIASKMKETRKQKSYDTLKMIAQNITFKAHASKLLAPVTNNLQKHLTPKAKMKLEMMLSSIAAGLESNPSVDQTDLFIFIYGLIEDGVKNESGQGKNSSLAEPLKKCRKVVSENIRTPRRAFLADSPCSHLIMGFALKVLHGRVKKLKLGERDQQLLSMLDPFVTLLGKCLISKYEDVLSTSLKCLTPLVRLPLPSIKSQADQMKAVLMDIAQSSIDPNSPLMQSCLTLLIVLLRSTEITLSSDQLRLLIQFPLFVDLEKNPTFIALSLLKSIISRKLVAPEIYDLSTRVAELMVTSQVESVRKKCSKILLQFLLDYPLSDKRLQQHIDFLLSNLRYEHSTGREAVLEMLHTILIKFPKSVVDELSQTLFLHLVVCLANDQDNNVRSMTGAVIKSLIGRISPHLLNAILDYSLSWYMGAKKQHLKSAAAQVLGLLVEVQKRGFEKHVRKVLSVTVEVLQSAVNANTNNESSSSVEANIPFWNETYYSLVMLEKMLPHFHELYSEKDLEDLWELICKLLLHPHTWLRNISNRLIGSYFTIVTAKEGDPEKLFKTHLLFQPYRLCLIAASLCCQLKTQLIDDVVGSGIAQNLVVALFSVHTFMAKMEKSDSLIYWSTLEQHEQTCFLDAFQLLDSRKGRNMFLSLTSGICDPNDEVLDREISYFIVSNLLRQMGKIALQRDTIQMKIVFETFSKFSSQVGPDDFQHYAHPILLPLYKVREGFAGKVIPDDVNQVAQEVCESIQKCWGIQNFVQVYTQIKKGLKEKRDKRKQEEKRMAVVNPMRNAKRKLRIAEKNRANKRRRMATMKMSRWVGLKHA 1885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30091321 30103346 + Bma019900.1 Bma04g01164 81533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01164 1885 Coils Coil 1850 1870 - -
Bma04g01164 1885 Pfam Down-regulated in metastasis 110 718 IPR011430 -
Bma04g01164 1885 Gene3D - 1232 1608 IPR011989 -
Bma04g01164 1885 SUPERFAMILY ARM repeat 677 1608 IPR016024 -
Bma04g01164 1885 Pfam Domain of unknown function (DUF6700) 939 1154 IPR046523 -
Bma04g01164 1885 Gene3D - 681 1020 IPR011989 -
Bma04g01164 1885 PANTHER UNCHARACTERIZED 39 1871 - -
Bma04g01164 1885 SUPERFAMILY ARM repeat 56 637 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01164 K14772 UTP20; U3 small nucleolar RNA-associated protein 20 - qsu:112005990 2302.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g934 . . Bda03g01138 . Bpe04g01081 . Bma04g01164 . . . . . . . . . . . . . . . . . Cla06g00778 Cam06g0832 Cec06g0846 Cco06g0856 Clacu06g0835 Cmu06g0806 Cre06g1587 . . . . . . Chy05g00581 . . . . . . . . . Sed09g0168 . . . . . . . . Bhi12g01475 Tan06g2279 Cmetu05g0652 . Hepe03g0379 . . . . . . . . . Lsi09g01121 . . Cme05g00737
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011152 1 1 0 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01164 Bma_Chr04 FPKM 1.34688 1.653405 0.862339 0.625137 0.278961 0.516306 0.0 4.077625 4.963434 4.824946