Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01167 ATGGGGAAGAAAGCTTTGCTTCCAACCCTCGGAGACTTCACCAACAAGGACAATTGGGACAAATTCTTCGCCCTCCGCGGCCCCGACGACGCCTTTGAGTGGTACGCTGAGTGGGACGAGCTCAGCCTCCAACTCCTTCCCCTGCTCTCTCAGTCCCCGAATCCTCAAATTCTAGTTCCCGGCTGTGGAAATTCCCTCCTCTCCGAACACCTTTATGATGCCGGATTTCGCTCCATTACTAACATTGACTTCTCCAAAGTGGCTATTTCCGGTATGTTGCGCCGCAACGTCCGTCATCGTCCAGATATGAGGTGGAGAGTCATGGATATGACCAGTATGCAGTTCATGGATGGCACCTTTGATGCTGTTCTTGATAAAGGTGGATTAGATGCTTTGATGGAGCCAGAAGTTGGCACTAAGCTGGGAAATCAATACTTATCTGAGGTCAAAAGAGTCGTAAAATCTGGGGGAAAGTTCTTTTGTCTTACTTTGGCAGAATCTCATGTTCTAGCTTTGCTCTTTTCAAAATTCCGTTTTGGGTGGAAACTGAATGTTGCTTCCATACCTCAAAAGCCATCGAGTAAACCTAACTTTCAGACATTTATGGTAGTCGCTGAGAAATATGAATCCAGTGCTATTTACCAAATACTTTCTAATGTCAATCATTCTCCTGTTAGTTGTAATGGAAATCAGATATATGGTCTCCATGAAGCTATTGAGAATGAAAATAGAATCCGGGAAGAATATGCCAATGGTTCTGATCTTTCGTACTCTCTTGAAGACCTTGAACTTGGAGCAAAAGGTGATTTGAAGATTCTTCAACAAGGGCATCGGTTTAAACTTATTTTGGGTGGACAAGGGGCCTCCCTTTTCAGCTACCGAGCAATTCTTCTTGATGCCCGGGAACATTTTGGCCCATTTTCTTATCAATATGGAGTTTTCATAGTGCCAAAGGCTCGAGCTCATGAATGGCTATTCTTGTCAGAAGAAGGGCAATGGATGGTTGTTGAAAGCTCAAAGTCAGCTCGTTTAGTAATGGTCTTTTTAGACAAGAGCCACTCTAATAGTAGCATGGACATTATTCAGAAAGATCTATCTCCCCTGGTTAAACAATTGACGCCTGGGAAAGATGTCATGGAGGCTGAAATTCCTTTCATGATGGCAAGTGATGGGATCAAGCGGCGCAACATCATTCACCAGGCAACATCTTCACTAACAGGGAAAATAGTCGTTGAGGATGTAGTTTATGAAAATTCTAGTGGCAATGCTAGTTGCCTTTTTCTATCTGAAGAGTTGATATTCCGGCGTCTCATGTTTCAAAGAACTGAGGGTCTGGTGCAATCGGAAGCTTTACTAATTAAGGAAGGGACTTCTGAGAATCTTGATGATGAGACAAGGAGGAAGAAAAGTTCTTCATCCTCTAAATATAAAAATAGAGGAGGTCAAAGACAGACAGAGCAAAGCGACCATCTGAAGGTGTATCATGACTATTTAGCAAGTTCTTATCATACGGGTATCATTTCTGGGTTTATGCTAATTTCTTCATTCATGGAAAGTGTGGCATCATCCGGAAAGACCGTCAATGCCGTTGTTATTGGACTTGGAGCAGGTTTATTACCTATGTTTCTTCATGCTTGCATGAGCTTTTTGCACATTGAGGTGGTGGAGTTAGATCCAACTATCTTTACTTTAGCTAGGGATTACTTTGGTTTTTCCGAGGATGAACAATTGAAGGTGCATATTGCCGATGGGATTCAATTTGTTAGAGAGCTAAAAAGTTCTGAAAAAACTGAGAATGGGCTTGCTTTCCCATTGTCCAATGGAAATTGCGATTCTCTTAGCACAGCAGGCAGAGGGACAACAAAGATTGACATACTTATTATTGATGTGGATTCTTCTGACTCAAGCTCTGGAATGACCTGCCCTGCTGCTGACTTTGTGGAGGAATCATTTCTTCAAACAGTGAAGAATACTCTTTCTGAGCAGGGGCTCTTCATTGTTAATTTGGTCACGCGGTCTCCTGTGATTAATGATATGGTTGTTTCTAGGATGAAAGCGGTCTTTGGCCAACTTTATGGCCTCCAGCTTGAAGAAGACGTCAATGAAGTGTTGTTTGCTCTTCCTTCAGAATCCTGCAAAAATGATGGCTCTTTCTCTCAAGCCTCCTTCCGACTTGAGAAACTCTTGGAACTTAAACACCCAGAGATAAATCTAAGCATTATGGAGGCCACGAAGAAGATCAGATGTTTGAAATAG 2256 42.64 MGKKALLPTLGDFTNKDNWDKFFALRGPDDAFEWYAEWDELSLQLLPLLSQSPNPQILVPGCGNSLLSEHLYDAGFRSITNIDFSKVAISGMLRRNVRHRPDMRWRVMDMTSMQFMDGTFDAVLDKGGLDALMEPEVGTKLGNQYLSEVKRVVKSGGKFFCLTLAESHVLALLFSKFRFGWKLNVASIPQKPSSKPNFQTFMVVAEKYESSAIYQILSNVNHSPVSCNGNQIYGLHEAIENENRIREEYANGSDLSYSLEDLELGAKGDLKILQQGHRFKLILGGQGASLFSYRAILLDAREHFGPFSYQYGVFIVPKARAHEWLFLSEEGQWMVVESSKSARLVMVFLDKSHSNSSMDIIQKDLSPLVKQLTPGKDVMEAEIPFMMASDGIKRRNIIHQATSSLTGKIVVEDVVYENSSGNASCLFLSEELIFRRLMFQRTEGLVQSEALLIKEGTSENLDDETRRKKSSSSSKYKNRGGQRQTEQSDHLKVYHDYLASSYHTGIISGFMLISSFMESVASSGKTVNAVVIGLGAGLLPMFLHACMSFLHIEVVELDPTIFTLARDYFGFSEDEQLKVHIADGIQFVRELKSSEKTENGLAFPLSNGNCDSLSTAGRGTTKIDILIIDVDSSDSSSGMTCPAADFVEESFLQTVKNTLSEQGLFIVNLVTRSPVINDMVVSRMKAVFGQLYGLQLEEDVNEVLFALPSESCKNDGSFSQASFRLEKLLELKHPEINLSIMEATKKIRCLK 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30111432 30119609 - Bma019902.1 Bma04g01167 81536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01167 751 Pfam Methyltransferase domain 59 161 IPR013216 GO:0008168
Bma04g01167 751 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 14 165 IPR029063 -
Bma04g01167 751 CDD AdoMet_MTases 57 161 - -
Bma04g01167 751 Gene3D Vaccinia Virus protein VP39 477 730 IPR029063 -
Bma04g01167 751 Gene3D Vaccinia Virus protein VP39 11 220 IPR029063 -
Bma04g01167 751 MobiDBLite consensus disorder prediction 459 487 - -
Bma04g01167 751 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 526 710 IPR029063 -
Bma04g01167 751 PANTHER EEF1A LYSINE AND N-TERMINAL METHYLTRANSFERASE 11 714 - -
Bma04g01167 751 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 11 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01167 K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase [EC:2.1.1.-] - jre:109008452 974.156
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00050 Bma-Chr3:456744 Bma04g01167 Bma-Chr4:30111432 3.84E-24 dispersed
Bma04g01167 Bma-Chr4:30111432 Bma15g00473 Bma-Chr15:5403875 3.29E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g949 . Blo12g00108 . . . . Bma04g01167 . . . . . Car06g01061 . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00374 . . . . . . . . . Cmo06g01245 . . . . . . . . . . . . . . . . . . . . . . . Chy06g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010449 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01167 Bma_Chr04 FPKM 18.256088 19.79517 17.28471 17.904636 17.714708 17.369967 18.76449 23.620813 20.668373 22.296877