Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01170 ATGGGGGATGTTACAATCGAGGCCGTGGAGAATCGGAGGAAGGCAATCAAGCTCCCGATTCCAGGGAAGAGGAACATTCTCATCACCAGCGCCTTGCCCTATGTCAACAATGTCCCTCATCTCGGCAACATCATTGGATGTGTTCTTAGCGCTGATGTTTTTGCTAGATACTGCCGTCTTCGAGGTTACAATGCCATATACATATGTGGAACAGATGAGTATGGTACGGCAACAGAGACCAAAGCCATGGAAGAGAACTGTACGCCTAAAGAAATCTGTGACAAGTACCATGCAATTCATAGGAAAGTTTACGAATGGTTTGATATCAGCTTTGATGAATTCGGTAGAACATCATCCCCCCAGCAGACTGAAATTTGCCAGGCAATTTTTAAAGATATATTGAAGAACAATTGGTTAATTGAGAAGACTATGAATCAGCTTTACTGTGATAAATGCAAAAAGTTCTTAGCTGATCGTCTTGTGGAAGGCACCTGCCCCACTCCGGGTTGTGAGTATGACTCTGCAAGAGGCGATCAGTGTGAAAAATGTGGAAAGCTCTTTGATCCAACAGAACTAATAGATCCGAGGTGCAAGGTTTGCCGAACCACTCCTCATAGTCGTGAAACAGATCACTTGTTTCTTGATCTACCTCGATTGAAAGAGAAATTGAATGAATACATCGACAAAACATCAGTGGCTGGATCTTGGAGTCAAAATGCCATTCAAACAACAAATGCATGGCGTAAAGAAGGTCTCAAACACCGGTGTATAACTAGGGATTTGAAGTGGGGCGTTCCTGTTCCACTTGAAAAATTCAAGGACAAGGTTTTTTATGTCTGGTTTGATGCACCTATTGGATATGTCTCAATCACTTCATGCTACACTCAACAATGGGAGATGTGGTGGAAGAATCCTGAAAATGTAGAGCTTTATCAGTTTATGGGAAAGGATAATGTGCCATTCCACACAGTGATGTTTCCTTCCACTCTTCTCGGGACAAGTGAAAACTGGACTCTGATGAAAACTATTAGCGTCACTGAATATTTGAACTACGAATCAGGCAATAAGGGCATAGGGGTTTTTGGCAATGATGCTAGAGATACAAGTATCCCTGTTGAAGTATGGAGATATTACTTGTTAACTAATAGGCCAGAGGTCTCAGACACCTTGTTTACATGGGCGGACTTGCAAACTAAATTAAATGGCGAGTTGTTAAATAATTTGGGCAACTTTATCAACAGAGTTTTGAGTTTTATTGCCAAACCTACAGGTCAGGGTTATAATTCTATTATTCCTGATGCTTCTGATGTGAAGTTGCATGACCTAACTGGGAACTTCGCTGAAAAAGTTGGTAAATACATCGACCAATACGTTGAGTCCATGGAGAAGGTCAAACTGAAACAGGGACTAAAAGCTGCAATGGCCATTTCTAGCGAGGGTAACACTTATCTGCAAGCTAGCCAATTTTGGAAACTTTACAAGGAGGATCAAGCTTCGTGCTCCATAGTGATGAGAACTTCAGCCGGGATAGTCTATGTTCTTGCATGTTTATTAGAACCTTTCATGCCTTCTTTCTCTCGTGAGGTATTTAAGCAGCTTAATTTGTCTCCTGAGATGCAATTTTCACTTTGTGATGAAAATGGAGACTTTGCCAAGGCAAAACGATCTTGGGAGATCTTGCCTTCTGGTCACAAAATAGGTACTCCGGAGCCATTGTTCAAGGAAATGAAAGATGAAGAAGTGGAATTTTACAGGAAGAAGTTTGCTGGAAGTCAAGCTGAAAGGATTGTGAGAGCAGAAGCTGAAGCGGGGAAGCTTGCTGAGCAACTGAAGAAAACTAAAGTCTCAGATGGTGCCGGAAAAAAGCAACCACCAACCAAATTAGCTTCTGCTTCCAAATCTAAAACTGCTGTTGAACCAGAAATTTCTGTTAGTAGATTGGATATTCGTGTTGGCCTCATTACAAAAGCTCAGAAGCACCCTGACGCTGATTCACTTTATGTGGAAGAGATCGATGTGGGTGAGGAAATCCCTAGGACCGTTGTTAGTGGACTGGTCAAATACATACCTCTTGAAGAAATGCAGAATCGGAAGGTCTGTGTTCTTTGCAATCTGAAGCCAGCAACCATGCGGGGTATTAAATCACAAGCAATGGTGCTTGCAGCTTCCAACAGTGACCACACCAAGGTTGAGTTGGTTGAACCACCCAAAACTGCTCCTGTAGGGGAAAGAATTACATTTGCTGGGTTTCAAGGTGAGCCTGATGATGTCTTGAATCCTAAGAAGAAGGTGTGGGAAACACTGCAGGTAGATTTCCATACAAACTCAAACCAAGAGGCATGTTTCAAAGATATTCCATTCGTCACGTCTACGGGTATTTGTACAGTTGCTTCTATCTCCAATGGATCGATTAGA 2415 42.28 MGDVTIEAVENRRKAIKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENCTPKEICDKYHAIHRKVYEWFDISFDEFGRTSSPQQTEICQAIFKDILKNNWLIEKTMNQLYCDKCKKFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLFDPTELIDPRCKVCRTTPHSRETDHLFLDLPRLKEKLNEYIDKTSVAGSWSQNAIQTTNAWRKEGLKHRCITRDLKWGVPVPLEKFKDKVFYVWFDAPIGYVSITSCYTQQWEMWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYESGNKGIGVFGNDARDTSIPVEVWRYYLLTNRPEVSDTLFTWADLQTKLNGELLNNLGNFINRVLSFIAKPTGQGYNSIIPDASDVKLHDLTGNFAEKVGKYIDQYVESMEKVKLKQGLKAAMAISSEGNTYLQASQFWKLYKEDQASCSIVMRTSAGIVYVLACLLEPFMPSFSREVFKQLNLSPEMQFSLCDENGDFAKAKRSWEILPSGHKIGTPEPLFKEMKDEEVEFYRKKFAGSQAERIVRAEAEAGKLAEQLKKTKVSDGAGKKQPPTKLASASKSKTAVEPEISVSRLDIRVGLITKAQKHPDADSLYVEEIDVGEEIPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNSDHTKVELVEPPKTAPVGERITFAGFQGEPDDVLNPKKKVWETLQVDFHTNSNQEACFKDIPFVTSTGICTVASISNGSIR 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30215376 30228894 + Bma031132 Bma04g01170 81539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01170 805 PANTHER METHIONINE--TRNA LIGASE 15 805 IPR023458 GO:0004825
Bma04g01170 805 Pfam Anticodon binding domain of methionyl tRNA ligase 445 592 IPR041872 -
Bma04g01170 805 TIGRFAM metG: methionine--tRNA ligase 26 556 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Bma04g01170 805 SUPERFAMILY Nucleic acid-binding proteins 643 803 IPR012340 -
Bma04g01170 805 CDD MetRS_core 25 391 IPR033911 GO:0004825|GO:0006431
Bma04g01170 805 SUPERFAMILY Nucleotidylyl transferase 23 401 - -
Bma04g01170 805 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 408 589 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma04g01170 805 Gene3D - 161 197 IPR029038 -
Bma04g01170 805 CDD tRNA_bind_EMAP-II_like 642 746 - -
Bma04g01170 805 Pfam Putative tRNA binding domain 649 744 IPR002547 GO:0000049
Bma04g01170 805 CDD Anticodon_Ia_Met 400 533 IPR041872 -
Bma04g01170 805 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 15 805 - -
Bma04g01170 805 Pfam tRNA synthetases class I (M) 26 416 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma04g01170 805 PRINTS Methionyl-tRNA synthetase signature 312 327 IPR033911 GO:0004825|GO:0006431
Bma04g01170 805 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825|GO:0006431
Bma04g01170 805 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825|GO:0006431
Bma04g01170 805 PRINTS Methionyl-tRNA synthetase signature 277 288 IPR033911 GO:0004825|GO:0006431
Bma04g01170 805 PRINTS Methionyl-tRNA synthetase signature 403 414 IPR033911 GO:0004825|GO:0006431
Bma04g01170 805 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825|GO:0006431
Bma04g01170 805 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma04g01170 805 Gene3D - 642 805 IPR012340 -
Bma04g01170 805 ProSiteProfiles tRNA-binding domain profile. 643 746 IPR002547 GO:0000049
Bma04g01170 805 Gene3D HUPs 25 404 IPR014729 -
Bma04g01170 805 Gene3D - 405 575 - -
Bma04g01170 805 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 197 IPR029038 -
Bma04g01170 805 MobiDBLite consensus disorder prediction 612 634 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01170 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csin:114267413 1350.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01136 Bma-Chr6:48246151 Bma04g01170 Bma-Chr4:30215376 4.34E-32 transposed
Bma08g01123 Bma-Chr8:50144587 Bma04g01170 Bma-Chr4:30215376 1.76E-50 transposed
Bma09g00244 Bma-Chr9:10632338 Bma04g01170 Bma-Chr4:30215376 0 transposed
Bma09g00554 Bma-Chr9:42502416 Bma04g01170 Bma-Chr4:30215376 0 transposed
Bma04g01170 Bma-Chr4:30215376 Bma05g01295 Bma-Chr5:52293883 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01170 Bma_Chr04 FPKM 0.579515 1.61567 0.621275 1.026725 0.0 0.0 0.0 0.0 0.0 0.0