Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01171 ATGGAGAAGAAGCGTCTACCGGATTGGCTCAACAGCTCCCTCTGGTCATCGGCCTCCGACCATCGCCTCCTCCGCTATCCCTCCCAATCTACCCTCGTTTCCCAACCTGCCGTTGAACATCCAGCTCCGCTTCCTCCTCCTTCTGTTACTTCCACCATTAGACCTGAGCCACCAAAGCAAGAAACTAAGCACTCTACGGGAAAGAAATTACCTAACTGTCCTCGTCCAAAGAATTTTTGTGGGTTTCACAATAATCTTAGTAGCGACGATGATGAACCTTCTGTAGGCCCTTCTGCCGAGGATATTTCTCGCCAGGCTCAGCTCTTGGTGGAGTTATCGCAGAAGGTTATAAGCATGAGTGCATTGCGAAAAATAGCATCTCAGGGTCTACCTGATGGCGCTGGTATTCGTTCTACTGTCTGGAAGCTCTTACTAGGGTATCTGCCTTCAGATCGTGGCCTTTGGCAGTCTGAATTAGCCAAAAAAAGGTCCCAGTACAAGCATTTTAAGGAGGATCTTTTGATGAATCCTTCAGAAATAGCTCGGAGATTGGATAAATCCACAAATAATGAGAAAGATGAGCCAAAATCTGAAGGGAAGGGATTACTTTTGCGATCAGAAATAACTCAAGGGGAGCATCCATTGAGTGTCGGGAAAACCAGCATCTGGAATCAGTACTTTCAGGACTCAGAGATTATTGAGCAGATTGATCGAGATGTAATGCGTACTCATCCAGACTTTCATTTTTTCTCTGGGGACTCACCGTTTGCAAAATCTAATCAGGAGGCTCTCAGAAACATCTTAATTGTCTTTGCAAAGTTGAACCCGGGTATCAGATATGTTCAAGGAATGAATGAAATTTTGGCTCCGTTATTCTTTGTATTAAAAAATGACCCTGATGAAGAAAATGTGGCCTGTGCTGAGGCAGATGCATTCTTCTGTTTTGTTGAGGTGTTAAGTGGCTTCCGAGATCATTTCTGCCAGCAGCTGGATAACAGTGTCGTTGGAATTCGTTCTACAATTACAAAATTGTCTCAACTTTTGAAAGAACATGATGAAGAATTGTGGCGTCACCTTGAGATCACAACAAAAGTAAATCCACAGTTCTATGCATTTAGATGGATTACTCTCCTCTTGACTCAGGAGTTCAATTTTGCCGACAGCCTTCACATTTGGGACACTATTTTGAGCGATGCCGAAGGTCCCCTGATTTTGATATGTAGAAATGAGGCAGAAAAATGTTTAATAGAGACATCTATTAACTCACTTCGCATAAGCCTCAAGGTTAAGCAAACAGATGAACTAGAAAACATGTTAACTAAAAAGTTTCTCAGATTTTTATCAATGAGAGCGGAAGCATTTCAGGTGTTGAGAAGAAAACCAGTGCAGGGATATGACACCAGCTTTCTTATAACAAATTATCACTGTGAGGAGTTGCAGAAGCAGAAGCTCATAGATTTTATTGTGCAGTTCATGGAGGACATTGATAAAGAGATAACTGAACTTAAAATGTCGGTGAACACAAGAGGAAGGCTGGTAGCAACAGAGTTTTTGAAGCAATTCATTTGA 1569 42.32 MEKKRLPDWLNSSLWSSASDHRLLRYPSQSTLVSQPAVEHPAPLPPPSVTSTIRPEPPKQETKHSTGKKLPNCPRPKNFCGFHNNLSSDDDEPSVGPSAEDISRQAQLLVELSQKVISMSALRKIASQGLPDGAGIRSTVWKLLLGYLPSDRGLWQSELAKKRSQYKHFKEDLLMNPSEIARRLDKSTNNEKDEPKSEGKGLLLRSEITQGEHPLSVGKTSIWNQYFQDSEIIEQIDRDVMRTHPDFHFFSGDSPFAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLFFVLKNDPDEENVACAEADAFFCFVEVLSGFRDHFCQQLDNSVVGIRSTITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDAEGPLILICRNEAEKCLIETSINSLRISLKVKQTDELENMLTKKFLRFLSMRAEAFQVLRRKPVQGYDTSFLITNYHCEELQKQKLIDFIVQFMEDIDKEITELKMSVNTRGRLVATEFLKQFI 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30229719 30244517 - Bma019906.2 Bma04g01171 81540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01171 522 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 217 327 - -
Bma04g01171 522 MobiDBLite consensus disorder prediction 81 100 - -
Bma04g01171 522 SUPERFAMILY Arp2/3 complex subunits 404 521 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Bma04g01171 522 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 405 - -
Bma04g01171 522 MobiDBLite consensus disorder prediction 183 202 - -
Bma04g01171 522 Gene3D - 397 521 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Bma04g01171 522 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 404 520 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Bma04g01171 522 MobiDBLite consensus disorder prediction 32 74 - -
Bma04g01171 522 MobiDBLite consensus disorder prediction 39 53 - -
Bma04g01171 522 SMART tbc_4 126 424 IPR000195 -
Bma04g01171 522 Pfam Rab-GTPase-TBC domain 226 405 IPR000195 -
Bma04g01171 522 MobiDBLite consensus disorder prediction 183 201 - -
Bma04g01171 522 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 111 358 IPR035969 -
Bma04g01171 522 ProSiteProfiles TBC/rab GAP domain profile. 131 399 IPR000195 -
Bma04g01171 522 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01171 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01171 Bma-Chr4:30229719 Bma13g01036 Bma-Chr13:42941950 7.34E-16 dispersed
Bma06g01022 Bma-Chr6:46866487 Bma04g01171 Bma-Chr4:30229719 2.53E-10 dispersed
Bma06g01025 Bma-Chr6:46910045 Bma04g01171 Bma-Chr4:30229719 9.48E-12 dispersed
Bma04g01171 Bma-Chr4:30229719 Bma05g01294 Bma-Chr5:52289220 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01171 Bma_Chr04 FPKM 8.35969 7.970269 126.128395 125.220734 641.553589 743.665771 619.390381 58.661415 60.700706 54.736401