Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01175 ATGGATCAGTTTGATGAATCCTTTCAAAACAAAGCAGAGGCAGTATTGCGAGTTTTAGCTTTAAGCAGATGGGTTAAAAAGGATGATGTACCCTGCCAAATTGAAGAGGGCCTGTTCTTGGGTTCTGTTGCAGCGGCTTCTAACAAGAATGGACTGCAGAGGTTGGGAGTAACCCACATTTTAACCATTGCATGTTCCTTACCGCCTTCGCATCCAACTGATTTTACTTATAAAGTGATCAAAGTCATGGACAAAGCGGACGAAGATATCAGAAGGTACTTTGATGAGTGTTTCAATTTTATTGATGAAGCTAGACGGTTAGGTGGTGGCATACTTGTTCATTGCTTTGCCGGACGATCCAGAAGTGTGACTATTGTAGTTGCCTATTTGATGAAAAGCTGTGGTGTGAGTCTTTCTAAAGCACTAAAGCTTGTGAAGATTAAACGGCCACTGGCAGATCCTAATGTTGGGTTCAAGTTACAATTGATGGATTTTGAAAAATCTCTTCAAGCAATGGAAGAAGAATTGAAAGAGCCATGA 540 40.93 MDQFDESFQNKAEAVLRVLALSRWVKKDDVPCQIEEGLFLGSVAAASNKNGLQRLGVTHILTIACSLPPSHPTDFTYKVIKVMDKADEDIRRYFDECFNFIDEARRLGGGILVHCFAGRSRSVTIVVAYLMKSCGVSLSKALKLVKIKRPLADPNVGFKLQLMDFEKSLQAMEEELKEP 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30620329 30622829 + Bma019912.2 Bma04g01175 81544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01175 179 CDD DSP 31 164 - -
Bma04g01175 179 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 16 173 - -
Bma04g01175 179 Gene3D Protein tyrosine phosphatase superfamily 32 178 IPR029021 -
Bma04g01175 179 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 171 IPR029021 -
Bma04g01175 179 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0008138|GO:0016311
Bma04g01175 179 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470|GO:0008138
Bma04g01175 179 PRINTS Atypical dual specificity phosphatase family signature 52 63 - -
Bma04g01175 179 PRINTS Atypical dual specificity phosphatase family signature 35 47 - -
Bma04g01175 179 PRINTS Atypical dual specificity phosphatase family signature 93 104 - -
Bma04g01175 179 SMART dsp_5 30 168 IPR020422 GO:0006470|GO:0008138
Bma04g01175 179 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 91 150 IPR000387 GO:0016311|GO:0016791
Bma04g01175 179 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 16 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01175 Bma-Chr4:30620329 Bma03g00116 Bma-Chr3:909104 1.32E-27 dispersed
Bma04g01172 Bma-Chr4:30285245 Bma04g01175 Bma-Chr4:30620329 1.22E-133 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01175 - - qsu:112012013 237.654