Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01175 | ATGGATCAGTTTGATGAATCCTTTCAAAACAAAGCAGAGGCAGTATTGCGAGTTTTAGCTTTAAGCAGATGGGTTAAAAAGGATGATGTACCCTGCCAAATTGAAGAGGGCCTGTTCTTGGGTTCTGTTGCAGCGGCTTCTAACAAGAATGGACTGCAGAGGTTGGGAGTAACCCACATTTTAACCATTGCATGTTCCTTACCGCCTTCGCATCCAACTGATTTTACTTATAAAGTGATCAAAGTCATGGACAAAGCGGACGAAGATATCAGAAGGTACTTTGATGAGTGTTTCAATTTTATTGATGAAGCTAGACGGTTAGGTGGTGGCATACTTGTTCATTGCTTTGCCGGACGATCCAGAAGTGTGACTATTGTAGTTGCCTATTTGATGAAAAGCTGTGGTGTGAGTCTTTCTAAAGCACTAAAGCTTGTGAAGATTAAACGGCCACTGGCAGATCCTAATGTTGGGTTCAAGTTACAATTGATGGATTTTGAAAAATCTCTTCAAGCAATGGAAGAAGAATTGAAAGAGCCATGA | 540 | 40.93 | MDQFDESFQNKAEAVLRVLALSRWVKKDDVPCQIEEGLFLGSVAAASNKNGLQRLGVTHILTIACSLPPSHPTDFTYKVIKVMDKADEDIRRYFDECFNFIDEARRLGGGILVHCFAGRSRSVTIVVAYLMKSCGVSLSKALKLVKIKRPLADPNVGFKLQLMDFEKSLQAMEEELKEP | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30620329 | 30622829 | + | Bma019912.2 | Bma04g01175 | 81544 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01175 | 179 | CDD | DSP | 31 | 164 | - | - | |
Bma04g01175 | 179 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B | 16 | 173 | - | - | |
Bma04g01175 | 179 | Gene3D | Protein tyrosine phosphatase superfamily | 32 | 178 | IPR029021 | - | |
Bma04g01175 | 179 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 31 | 171 | IPR029021 | - | |
Bma04g01175 | 179 | Pfam | Dual specificity phosphatase, catalytic domain | 38 | 167 | IPR000340 | GO:0008138|GO:0016311 | |
Bma04g01175 | 179 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 30 | 171 | IPR020422 | GO:0006470|GO:0008138 | |
Bma04g01175 | 179 | PRINTS | Atypical dual specificity phosphatase family signature | 52 | 63 | - | - | |
Bma04g01175 | 179 | PRINTS | Atypical dual specificity phosphatase family signature | 35 | 47 | - | - | |
Bma04g01175 | 179 | PRINTS | Atypical dual specificity phosphatase family signature | 93 | 104 | - | - | |
Bma04g01175 | 179 | SMART | dsp_5 | 30 | 168 | IPR020422 | GO:0006470|GO:0008138 | |
Bma04g01175 | 179 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 91 | 150 | IPR000387 | GO:0016311|GO:0016791 | |
Bma04g01175 | 179 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE | 16 | 173 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g01175 | Bma-Chr4:30620329 | Bma03g00116 | Bma-Chr3:909104 | 1.32E-27 | dispersed | |
Bma04g01172 | Bma-Chr4:30285245 | Bma04g01175 | Bma-Chr4:30620329 | 1.22E-133 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01175 | - | - | qsu:112012013 | 237.654 |