Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01178 ATGCAGTCTTCTGTAGATGTGGATTTCTTCACAGAGTATGGTGAGGGTAGCCGATATAGAATAGAGGAAGTTATTGGTAAAGGAAGCTATGGTGTTGTTTGTTCGGCATATGATACACATACGGGAGACAAAGTTGCCATTAAGAAAATCAATGATATCTTTGAGCATGTTTCCGATGCGACCAGGATCCTTCGGGAGATTAAACTTCTAAGACTTCTTCGACACCCTGATATTGTGGAGATAAAACATATTTTACTACCTCCTTCTAGAAGGGAATTCAAAGACATATATGTGGTTTTTGAGCTTATGGAATCAGACTTGCACCAAGTTATTAAAGCAAATGATGATTTGACTCCAGAACATTATCAGTTCTTTCTTTATCAATTACTTCGCGGGTTGAAATACATACACACAGCTAACGTCTTCCACCGGGATTTGAAACCAAAAAACATTTTAGCAAATGCTGATTGCAAACTCAAGATCTGTGACTTTGGCTTGGCAAGAGTTGCTTTTAATGATGCTCCTACTGCTATTTTCTGGACAGATTATGTTGCAACAAGATGGTATAGAGCACCCGAATTGTGTGGATCTTTTTTCTCAAAGTATACCCCAGCAATTGATATTTGGAGCATTGGGTGTATATTTGCTGAGCTTTTGACTGGAAAACCACTTTTTCCTGGGAAAAATGTGGTCCACCAATTAGATTTGATGACAGATCTGTTAGGGACACCTTCGGCAGAAGCCATTGCAAGGGTGCGTAATGAGAAGGCTCGGAGATATCTCAGCAGCATGCGAAGGAAAAAGGCTATTCCTTTTTCCCAGAAATTCCCTAATGCAGATCCTCTTGCACTCCGTCTGTTAGAAAGAATGTTGGCATTTGAGCCAAAAGATCGACCGACAGCTGAGGAAGCTCTGGCAGATACTTATTTTAAGGGCCTGGCAAAAGTTGAGAGAGAGCCTTTTGCTCAACCAATCACCAAGATGGAATTTGAGTTTGAGAGACGAAGGATTACGAAGGAAGACGTTCGAGAGCTTATTTACCGAGAGACTCTTGAGTACCATCCGAAAATGTTGAAGGAGTTCTTAGAAGGGTCAGAGCCTACAAGTTTCATGTATCCAAGTGCTGTTGACCATTTTAAGAAGCAATTTGCCTACCTGGAGGAACATTATAAAAATGGCTCAATTGGTGCTCCTCCTGAAAGGCAACATGCATCATTACCCAGGCCAAGTGTGTTATACTCGGATAACTTGGCACAAAATTCGGCTGATATTGCAACTGATCTCTCCAAGTGTTCAGTCAAAGAAATTGAAAGGTCACACGTTGAAACCAATTATGGTATCCCAATGGCTAGACTTCCTATCCAAGTTCCTCAAGGTATCTTCTCACTCTCTCTCTACCCATTTCAAAAGCAAAATAGTAAAGTTGGCTTCTTTATGATGGTCATCATTGAGTTGGTAACAGGTAGCGCAGCTAGGCCTGGGAAAGTGGTTGGGTCAGTGCTGAGATATAACAATGGCACAGGAGCAACATCGGAGGCTAATGAACAGAGAAGGATAGCAAAGCAAAACCCACATCTTCCAACTCAATATCCTCCTTCATCGTATCCAAGAAGAAACCCAGTCCCGGCGTGTAAAAACGAGGGAGAAGACGAAGTTGAAGTTTCCAACAATTTGCAGCCTAAGATTCCGTACATGGCTAGGAAAGTTGCTGCGGCTCAAGGTGGGTCTGGAAGCAACTGGTACTGA 1746 42.1 MQSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDAPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSAEAIARVRNEKARRYLSSMRRKKAIPFSQKFPNADPLALRLLERMLAFEPKDRPTAEEALADTYFKGLAKVEREPFAQPITKMEFEFERRRITKEDVRELIYRETLEYHPKMLKEFLEGSEPTSFMYPSAVDHFKKQFAYLEEHYKNGSIGAPPERQHASLPRPSVLYSDNLAQNSADIATDLSKCSVKEIERSHVETNYGIPMARLPIQVPQGIFSLSLYPFQKQNSKVGFFMMVIIELVTGSAARPGKVVGSVLRYNNGTGATSEANEQRRIAKQNPHLPTQYPPSSYPRRNPVPACKNEGEDEVEVSNNLQPKIPYMARKVAAAQGGSGSNWY 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31304470 31307328 - Bma019920.3 Bma04g01178 81547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01178 581 CDD STKc_TDY_MAPK 18 355 - -
Bma04g01178 581 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707|GO:0005524|GO:0006468
Bma04g01178 581 Gene3D Transferase(Phosphotransferase) domain 1 105 333 - -
Bma04g01178 581 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 473 - -
Bma04g01178 581 MobiDBLite consensus disorder prediction 521 554 - -
Bma04g01178 581 SUPERFAMILY Protein kinase-like (PK-like) 16 314 IPR011009 -
Bma04g01178 581 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Bma04g01178 581 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01178 581 SMART serkin_6 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01178 581 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 473 - -
Bma04g01178 581 Gene3D Phosphorylase Kinase; domain 1 34 355 - -
Bma04g01178 581 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01178 Bma-Chr4:31304470 Bma12g01235 Bma-Chr12:45319995 0 dispersed
Bma12g01276 Bma-Chr12:45765309 Bma04g01178 Bma-Chr4:31304470 3.87E-29 dispersed
Bma04g01178 Bma-Chr4:31304470 Bma15g00264 Bma-Chr15:2612270 4.50E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66468 PF00069 Pkinase 3.00E-67 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01178 - K04371 zju:107423242 949.503