Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01184 ATGTATCTGCTGAATGCCGCGTTGGCCACCCGGATGCTTTCTCGCACGACGGCGATCGGACCGGAGTTGAGGAGCGACATCGCTTTTGGAACGGCGTGGTGGTTCATCTATGCGGGCGTATGCTGCTGCCTCGTCCTCTTCGCTGGTATGATGTCTGGTTTAACCCTTGGCCTCATGTCTCTCAGCCGCGTCGACCTTGAAATTCTTGAGCGGAGCGGCACTTCCTCCGAGAAGAAACAGGCTGCAACCATTCTTCCAGTAGTCAAGAAGCAGCATCAGCTCCTCGTTACGTTACTTCTGTGCAATGCTGCTGCGATGGAGGCTCTTCCTCTGTATCTTGATAAACTCTTCAATCAATATATTGCTATTATTCTATCTGTGACTTTTGTGTTAGCTTTTGGGGAAGTCATACCGCAATCAATATGTTCTAGGTATGGTCTTGCTGTAGGGGCGAGTTTGGTATGGGTTGTACGAATCTTGATGATCATATGCTATCCAATTGCCTATCCCATTGGGAAGATCCTGGACTGCTTACTGGGACATGATGAGGCATTATTTAGGCGTGCTCAGTTAAAAGTTCTTGTCTCCATCCATGGCCAAGAGGCTGGAAAGGGCGGTGAACTTACCCATGACGAGACAACAATCATTAGTGGAGCACTCGACTTGACTGAAAAGACAGCTGAGGAGGCTATGACGCCAATTGAATCAACTTTTTCCTTGGATGTGAATTCAAAATTGGACTGGGAAGCAATGGGAAAAATTCTGGCTCGTGGTCATAGCCGAGTTCCTGTCTATTCTGGGAATCCAAAGAATATTATAGGGCTTCTTCTGGTTAAAAGTCTTCTTACTGTTCGACCTGAAACAGAGACACCAGTCAGTGCTGTTTCCATTAGGAGGATCCCCAGGGTTCCGTCAGATATGCCACTTTATGATATACTGAATGAATTTCAAAAAGGAAGCAGTCATATGGCAGCTGTGGTGAAAGCAAGAGGAAAAAGCAAAATTCTTCCACCAACAATGGATACAGAGGAAGCGGAAGAAAAGATAGTTATAATTGGTGACGCCCAACTTACTACTCCTTTACTAAACAAGAATGATGAAAAATCCAACAGTGTTGTAGTTGACATTGACAAAAGTTCCATGCCAACCAGCATAACTAGACAAACTTCTCTACAGCATAATGATGCCATTACAGTTGTATCAAAAGAGGATATTGAAGATGGAGAAGTTATTGGTATCATCACCCTCGAGGATGAAGAGATTGTGGATGAAACTGATGAATATGTTGATGTTCACAAAAGAATTCGAGTGGCTGCAGCAGCTGCTGCTTCTTCTGTGGCAAGAGCTCCATCAGTTAGGAGAATTACTGCCCATAAAGGA 1380 44.86 MYLLNAALATRMLSRTTAIGPELRSDIAFGTAWWFIYAGVCCCLVLFAGMMSGLTLGLMSLSRVDLEILERSGTSSEKKQAATILPVVKKQHQLLVTLLLCNAAAMEALPLYLDKLFNQYIAIILSVTFVLAFGEVIPQSICSRYGLAVGASLVWVVRILMIICYPIAYPIGKILDCLLGHDEALFRRAQLKVLVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKSKILPPTMDTEEAEEKIVIIGDAQLTTPLLNKNDEKSNSVVVDIDKSSMPTSITRQTSLQHNDAITVVSKEDIEDGEVIGIITLEDEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSVRRITAHKG 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31673591 31679142 + Bma031135 Bma04g01184 81553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01184 460 ProSiteProfiles CNNM transmembrane domain profile. 30 212 IPR002550 -
Bma04g01184 460 Pfam Cyclin M transmembrane N-terminal domain 41 211 IPR002550 -
Bma04g01184 460 PANTHER - 1 459 - -
Bma04g01184 460 Gene3D - 212 353 IPR046342 -
Bma04g01184 460 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 459 IPR045095 GO:0010960
Bma04g01184 460 SUPERFAMILY CBS-domain pair 216 418 IPR046342 -
Bma04g01184 460 CDD CBS_pair_CorC_HlyC_assoc 226 331 IPR044751 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01184 K16302 CNNM; metal transporter CNNM - twl:120015191 706.442
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01184 Bma05g00943 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01184 Bma-Chr4:31673591 Bma05g00943 Bma-Chr5:47454042 0 dispersed
Bma04g01184 Bma-Chr4:31673591 Bma04g00208 Bma-Chr4:1810479 1.86E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g425 . . . Bda08g00390 Bpe04g01193 Bpe14g01325 Bma04g01184 Bma05g00943 Cmo08g01144 Cmo17g00260 . . . . . . . . . . . . . . Cla06g00543 Cam06g0586 Cec06g0583 Cco06g0591 Clacu06g0573 Cmu06g0567 Cre06g1333 Cone14ag0819 Cone15ag0815 . . . . Chy11g01433 . . . . . Bpe05g00754 . . . . . . Cma08g01171 Cma17g00273 Car08g01049 Car17g00248 Cpe12g00226 Cpe17g00123 Bhi12g01796 . . . . . . . . . . . . . Lsi09g01359 . . Cme11g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001077 3 9 2 2 3 2 3 2 2 2 2 2 3 1 1 3 2 4 3 2 2 2 2 2 2 2 2 9 2 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01184 Bma_Chr04 FPKM 14.372549 0.0 4.288244 0.0 0.0 0.0 0.0 0.0 0.0 3.618204