Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01229 ATGGACGCAGATGATAAAGGCCAAGTTGTGGATGTGAGGTCAGTCGTCGAAGCAGTCGCTGCCCGTGGTGATTGCGATGTTCCGGTCTACGTGGTCGAAAGCCTTTGCATGCGCTGTAGAGAAAATGGGATAACAAGATTTCTTTTAACTATAATTCCACACTTCAGGAAGATATTGTTGTCGGCCTTTGAATGTACACATTGTGGTGAGAGGAATAATGAGGTTCAATTTGCTGGAGAGATTCAACCACGTGGATGCTGCTACATTTTGGAGGTCTCCGCGGGCGATTTGAAGATGCTTAATCGACAAGTAGTGAAAGCTGAGTCTGCTACAATTAGGATTCCTGATTTGGATTTTGAGATTCCTATTGAGGCTCAACGAGGAACTCTTTCTACGGTGGAAGGGATACTAGCTAGAGCAATGGATGAATTGCAGGCTCTTCAAGAAGAGCGTAGGAGATTGGATCCTCAAACCGCTGAAGCAATTGATCAGTTTTTGTTGAAATTAAAAGCTTGTGCGATGGGAGATACATCATTCACTTTCATCTTGGATGATCCGGCTGGAAACAGCTTCATTGAGAATCCATATGCTCCATCGTCAGACCCATCATTGAGTGTTAAGTTCTATGAGCGAACTCCAGAGCAACAAGCATCATTGGGATATCTCGTTGACTCATTTGAATCAAGAGAAGGTGCTAATGGTGCATTATCAGATGAAAGAGCTGGTGTTTCAGAAATCGGAACAGTGCCAACTTCATCAGTTGGAGCACCAGCTGGCCATCGAGCAATTGCTCAGAGTAATAGTGCAGAGATTGCTGAAGCTTTATTTCGTTACACTGCTCCTGAAGAAGTTATGACTTTTCCATCAACATGTGGGACTTGTGCTACCAGCTGCGAGACTCGAATGTTTGTTACAAACATACCTTATTTTCAAGAAGTGATTGTCATGGCATCCACCTGTGATTCATGTGGTTACCGTAATTCTGAGTTGAAGCCTGGTGGTCGAATTCCCGAAAAAGGAAAAATAATTACTCTCCAAGTAAAGAGCTCTAAGGATCTTAGTCGTGATGTTATAAAGTCAGATACTGCTAGTGTAAGAGTTCCGAATCTGGACTTGGAGCTGGCTAGTGGCACTCTTGGAGGAGTCGTTACAACGGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGAGTGCATGGATTTACCTTCGGAGACAGTCTTGATGATGATAAAAAGAGCAAGTGGCAAGATTTTGGAAAGAGGTTAAATAAGCTTCTGACTTTGGAAGAGCCTTGGACTTTGATTTTGGACGATGCATTGGCAAATTCATTTGTTGCTCCATCAACTGACTATATCAAAGACGACCTACAATTAACCTTCGAGGAGTATCAGAGGTCATGGGAGCAGAACGAAGAGCTGGGTCTGAACGATATGAACACGGGAGCAGCCGACGTTGCTTATGATTCGGGTGAGTAG 1482 43.39 MDADDKGQVVDVRSVVEAVAARGDCDVPVYVVESLCMRCRENGITRFLLTIIPHFRKILLSAFECTHCGERNNEVQFAGEIQPRGCCYILEVSAGDLKMLNRQVVKAESATIRIPDLDFEIPIEAQRGTLSTVEGILARAMDELQALQEERRRLDPQTAEAIDQFLLKLKACAMGDTSFTFILDDPAGNSFIENPYAPSSDPSLSVKFYERTPEQQASLGYLVDSFESREGANGALSDERAGVSEIGTVPTSSVGAPAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGTCATSCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKIITLQVKSSKDLSRDVIKSDTASVRVPNLDLELASGTLGGVVTTVEGLITKISESLERVHGFTFGDSLDDDKKSKWQDFGKRLNKLLTLEEPWTLILDDALANSFVAPSTDYIKDDLQLTFEEYQRSWEQNEELGLNDMNTGAADVAYDSGE 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35692039 35699812 + Bma020002.1 Bma04g01229 81598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01229 493 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Bma04g01229 493 Pfam ZPR1 zinc-finger domain 289 447 IPR004457 GO:0008270
Bma04g01229 493 PANTHER ZINC FINGER PROTEIN ZPR1 3 491 IPR040141 -
Bma04g01229 493 SMART zpr1 289 449 IPR004457 GO:0008270
Bma04g01229 493 SMART zpr1 34 194 IPR004457 GO:0008270
Bma04g01229 493 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 491 - -
Bma04g01229 493 Coils Coil 130 157 - -
Bma04g01229 493 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Bma04g01229 493 Gene3D ZPR1, A/B domain 335 477 IPR042451 -
Bma04g01229 493 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 481 IPR004457 GO:0008270
Bma04g01229 493 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 36 218 IPR004457 GO:0008270
Bma04g01229 493 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Bma04g01229 493 Gene3D ZPR1, zinc finger domain 23 79 IPR042452 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01229 Bma-Chr4:35692039 Bma07g00999 Bma-Chr7:38991888 1.14E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01229 K06874 - pop:7468335 752.666