Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01239 ATGGCAATCTTACGATTGCTGATTTTTCTGGGTTTCTTTTGCATTGCAATTCGCATTGCCTCCTCCGTTACAGACAGCAACGATGCTGCAACGCTCCAGGCACTGAAAAATCAATGGAAAAATGTACCACCAAGCTGGCAAAACTCAAATGATCCTTGTGGAGGTTCCTGGGATGGAGTTACCTGCAACAATTCAAGAGTAACAGGATTGAGATTATCAAGCATGAATCTCGAAGGTAAACTTAGTGGTGATATTGGAGGCCTGTCTGAGTTGACATCCTTGGACCTGTCGTTCAACTCAAATCTGACAGGTTCTCTTTCTCCTCGTTTAGGAGATTTGAAAAAGTTAACTATCTTAATTCTGGCTGGCTGTGGCTTTAGTGGTAGCATTCCAGATGAATTAGGCAATCTTGAAGAGCTATCCTTCTTGGCTCTGAATTCAAATAAATTCACTGGGACAATACCTTCCTCTTTGGGTAATCTTTCGAAACTTTATTGGCTGGACATAGCCGACAATGAATTGAGTGGACAAATTCCAGTTTCAACTTCCAGCACAACAGGCTTGGATCGCCTTTTAAATGCTAAACACTTCCATTTCAATAAAAACAAGCTGACAGGCTCCATACCACCAAAACTATTTAGCGCGGAGATGATATTAATACATCTATTATGCGATGGAAATCAACTTTCTGGAAATATTCCATCAACACTAGGACTGGTTCAAACCCTTGAGGTTCTTCGGCTTGATCGAAATACTCTTTCAGGAAGTGTCCCATCCAATTTGAGCAACCTTACAGAACTAAATGAACTGCATCTTGCCCACAATAACTTGATAGGTCCATTACCAAACTTAGGCCAAATGAGTTCTCTAAATTATGTGGACCTCAGTAACAACTCATTTGACTCCTCACCCGCTCCAGTTTGGTTCTCAAGTTTATCATCTCTAACTACCTTGATTATGGAATTCGGATCCTTACAAGGAGACGTACCACAAGAAATCTTCAGTTTACCTCAGATACAGCAAGTGAAATTGAGGAACAATGCATTTAATGGTACTTTAGACATGGGAAGCAGCATCAGCTCACAACTGCAGCTTGTCGATTTGCAGTATAATCTGATTTCAAAACTTATTGTCGGTAATGGATACACTAAAACATTAACACTCATCGGAAACCCCCTCTGTGATGGTGATCTCTCAAATAATAATTACTGCAAGCTTCAGCAAGGAACTACCGAGCCCTATTCTACTAGCCTATCCAACTGTGGCAGTAAAACGTGCGAATTTTATCAGAAGTTGAATCCTCAAAGTTGTGAATGTGCTTATCCATATGAAGGGACTTTGTATTTCAGAGGACCACCCTCATTCAGGGAATTGTCCAATGCTACTTTGTTTAATTCACTGGAAAAGAGCCTGTGGCAGACTCTTGGCCTCACCCCCGGCTCAGTTTCTCTAGAAAACCTTTTCTTCAATGCTGATGACTATCTTGAAATGCATCTATCGCTCTTTCCGACCGCAGAACAATATTTCAACAGATCTGAGATTCAAAGACTTGGTTTTGCCTTGAGTAATCAAACTTATAAACCTCCGCACGAGTTTGGGCCTTATTATTTTATCGCCTCTCCTTACGGTTTTTTGGTCTCAACCTCAAATAAACGATCTATTAGCTCTGGTGTGATAGCGGGTATATCAGTTGGCTGCGGGCTTCTCATTATTGGCCTTGTTGGAGTTGCACTCTATGCCCTTCGGCAAAAGAAACGTGCAGAAAAAGCCATCGGATTGAGCAGACCATTTGCTTCGTGGGTACCAAGTGGCAATGATAGTGGAGGGGCACCGCAGTTAAAAGGAGCGAGATGGTTTTCCTATGAGGAGCTCAAAAAATGCACCAATAATTTCTCTGCGAGCAATGAGATAGGGGCTGGAGGCTATGGCAAGGTTTATAGAGGAGTGTTTCCTGACGGAGTAATAGTCGCCATCAAAAGAGCCCAGCAAGGATCAATGCAGGGAGCAGCTGAGTTCAAGAACGAAATTGAATTGCTTTCGCGAGTTCATCACAAAAACCTCGTTGGCCTTGTCGGATTTTGTTTCGAACAAGGAGAACAGATGCTGGTCTATGAATTTATGCCCAATGGAACCCTCCGAGAGTCACTCTCTGGGAAATCTGGAATTCAACTTGATTGGAATAGAAGATTACGAATGGCTCTTGGATCGGCCAGAGGACTAGCATATCTACATGAACTTGCAAATCCTCCGATAATCCACAGAGATGTTAAGTCCACCAATATCCTGCTCGATGAAAATTTGACTGCGAAGGTTGCGGATTTTGGACTGTCGAAGCTCGTAGCAGATGACGATAAAGGGCACGTGTCGACTCAAGTAAAAGGCACTCTGGGCTATCTGGATCCTGAATACTACATGACCAATCAATTAACGGAGAAGAGCGATGTCTATAGCTTCGGAGTCGTTATGTTGGAACTGATTACGGCAAAGCAACCGATTGAAAAAGGGAAGTACATAGTTCGTGAAGTTCGAACATTGATGAACAAGAACGATGAACGATATGGCGTGCGAGAGCTAATAGACCCCGCCATTAGAAACATGTCTTACCTTCTTGGGTTTGGCAGATTTTTGGAGTTGGCCATGCAATGTGTGGAGGAATCGGCCGCAAAACGTCCAACGATGAACGACTTAGTCAAGGCAATCGAAACCATTTTACAAAGCGACGGTATAAAAACGAACTCCACATCTGCATCCTCATCGGCAACCGACTTTTCAAAAGGCGTGATGAAGCATCCTTACAACGAAGATTTATCGGGGAACGATTTTAGCGACAGCACTGCTTTTGAGTATAGTGGTAAGAACTACCTTTCTACAAGTGTGGAGCCAAAGTAG 2889 42.85 MAILRLLIFLGFFCIAIRIASSVTDSNDAATLQALKNQWKNVPPSWQNSNDPCGGSWDGVTCNNSRVTGLRLSSMNLEGKLSGDIGGLSELTSLDLSFNSNLTGSLSPRLGDLKKLTILILAGCGFSGSIPDELGNLEELSFLALNSNKFTGTIPSSLGNLSKLYWLDIADNELSGQIPVSTSSTTGLDRLLNAKHFHFNKNKLTGSIPPKLFSAEMILIHLLCDGNQLSGNIPSTLGLVQTLEVLRLDRNTLSGSVPSNLSNLTELNELHLAHNNLIGPLPNLGQMSSLNYVDLSNNSFDSSPAPVWFSSLSSLTTLIMEFGSLQGDVPQEIFSLPQIQQVKLRNNAFNGTLDMGSSISSQLQLVDLQYNLISKLIVGNGYTKTLTLIGNPLCDGDLSNNNYCKLQQGTTEPYSTSLSNCGSKTCEFYQKLNPQSCECAYPYEGTLYFRGPPSFRELSNATLFNSLEKSLWQTLGLTPGSVSLENLFFNADDYLEMHLSLFPTAEQYFNRSEIQRLGFALSNQTYKPPHEFGPYYFIASPYGFLVSTSNKRSISSGVIAGISVGCGLLIIGLVGVALYALRQKKRAEKAIGLSRPFASWVPSGNDSGGAPQLKGARWFSYEELKKCTNNFSASNEIGAGGYGKVYRGVFPDGVIVAIKRAQQGSMQGAAEFKNEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGKSGIQLDWNRRLRMALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVADDDKGHVSTQVKGTLGYLDPEYYMTNQLTEKSDVYSFGVVMLELITAKQPIEKGKYIVREVRTLMNKNDERYGVRELIDPAIRNMSYLLGFGRFLELAMQCVEESAAKRPTMNDLVKAIETILQSDGIKTNSTSASSSATDFSKGVMKHPYNEDLSGNDFSDSTAFEYSGKNYLSTSVEPK 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36567348 36572976 + Bma020019.1 Bma04g01239 81608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01239 962 Pfam Protein tyrosine and serine/threonine kinase 634 899 IPR001245 GO:0004672|GO:0006468
Bma04g01239 962 PANTHER LRR RECEPTOR-LIKE KINASE 1 934 - -
Bma04g01239 962 SMART serkin_6 631 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01239 962 SUPERFAMILY Protein kinase-like (PK-like) 616 908 IPR011009 -
Bma04g01239 962 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 934 - -
Bma04g01239 962 Gene3D Ribonuclease Inhibitor 25 187 IPR032675 -
Bma04g01239 962 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Bma04g01239 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Bma04g01239 962 CDD STKc_IRAK 637 903 - -
Bma04g01239 962 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524
Bma04g01239 962 SUPERFAMILY L domain-like 44 409 - -
Bma04g01239 962 ProSiteProfiles Protein kinase domain profile. 631 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01239 962 Gene3D Transferase(Phosphotransferase) domain 1 707 925 - -
Bma04g01239 962 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Bma04g01239 962 Gene3D Ribonuclease Inhibitor 188 421 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01561 Bma-Chr3:51976003 Bma04g01239 Bma-Chr4:36567348 1.59E-109 dispersed
Bma04g01239 Bma-Chr4:36567348 Bma12g00043 Bma-Chr12:966690 3.99E-09 dispersed
Bma12g00444 Bma-Chr12:11231440 Bma04g01239 Bma-Chr4:36567348 6.13E-67 dispersed
Bma14g01062 Bma-Chr14:12856006 Bma04g01239 Bma-Chr4:36567348 2.47E-72 dispersed
Bma04g01239 Bma-Chr4:36567348 Bma05g00909 Bma-Chr5:46955063 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66470 PF07714 PK_Tyr_Ser-Thr 4.00E-50 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01239 - - qsu:112004607 1415.59