Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01264 ATGGCGGAGGGTTTTGAGGGCTGCCATGTCCCACAGCAGAGCAGAAGAGATAAATTACGAGTCATCACGGCCCAGAATCACCCTCCTTGTCTAGAACCCACCATTAATCTTCATCGTTTTGCAGGATTACTCCCTCTGTACGATCCGTCGTCGCTTATCTCCTCTGATTTGCTAGCCTGCGCCAGTGCCACCGGCCAAGATTTTCACAACCACCACCACCACCAAACTAGCCTACTGCCTGGTCTGTCCGAAGGTTGCAAAGAAAACGCAGGTTGTTCGATCAAAGAAGAAGGCGTAAATTTGATGGGCTTTGCTGGTAATCTTATGAATACTCCTCCATCTACTTCGAATTCTCGCCTGCATCAAACTCAACATCCTTACTTTGATCTTCAGTCTTCGTTACCTATGAATCCTATCCCTATTCAAGATATTAACTCTAACCCTTTATTTTACTCCTCGCATACCCTCCAAAATCGCAGAGATTTCGACCACGCTTATAGTAGTGGTGGAGAAGTGGTCGTTTTTAAGCCAGAACCTCTATCGTTATCACTTTCCTCGCATCCCACATACCAGAACAGTCACCAGCTAGAACTCAATCTACAAAGATATGGGTCTGGACTTTATCCGTCACCCATTGTTGGGTCTATGTCAAATAATATATCGAGGAGCTCAGTCCCTCTCGGTCCTTTTACAGGCTATGCTTCCATTTTGAAAGGGTCTAGGTTTTTAAGGCCTGCACAGCAGTTGCTTGAGGAGTTTTGTGAAATTTGGTGTCAAGGGAATTACAGCGAAAAGTTAGAGGCTGATTCAGGCTTGATGGACTCGCCTTCCGAGACTTTAAGCGGAATCGTCGATGACTCTTTTAGCAGCGGTGGTGATGGAGGTGAAAGCCGAAGAAAAAAGTCTAAGCTTATTTCCATGCTCGATGAGGTCTACAGAAGATACAAGCAATACTACCAGCAAATGCAGGAAGTAGTTGCATCCTTTGAATGTGTTTCTGGCCTTGGCAATGCAGCCCCTTATGCCAATCTGGCTATAATATCAATGTCTAAGCATTTCAGATGCCTGAAAAATGCAATTTCGGATCAACTTCAAATCACCAAGGCTCCGAGTAATTATTGCCAGAAATACGTCCCGAATTCAGGATTTCTCGACCAGCAACCTGTTTGGCGACCTCAACGCGGACTTCCCGAGCGTGCAGTGACCGTTCTTCGAGCCTGGCTTTTTGAACATTTCCTCCACCCTTATCCGACGGATACAGACAAGGTCATGTTGGCGAAACAGACAGGTCTGTCACGGAGCCAGGTTTCTAACTGGTTTATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTAGAAGAAATACACATGCTTGAAACAAGACAAGGTCAAAAACCACCGCCCAGGGAGGATCGGACTGCCAATCGAACAAGTGATCATCGACCTTCAACAAACTCACTCGCAACGGACAATGCTTCCAAGTCCACCCAACTGGTTCAAGACATTCCCTCGAAACGAACGAGAAATGAACTTCAAAATCTGGCCATGGCAAATGAGGGGCAGTTGAATCTATCATATAATAATTTGTCGAGCCAGGACCCACAAATGGACGTAAATGTGAGCATTGCAGGTGGCAATGGTGGTGTTTCACTTACTCTTGGCTTGCACCAGAACAATGTCATTGATCTATCAGAGCCTTTTCCGATAAATGGAGTTCAACGATATGGCTTAGGCATCGAGGATAATATCAATGGCGATGGGTATGTCATGGGTGGTTTTGAAGCTCAAAGTCGGCACTTTGCGAGAGACGTGATTGGTGGGCAGCTTTTGCATGATTTTGTTGGCTGA 1848 45.89 MAEGFEGCHVPQQSRRDKLRVITAQNHPPCLEPTINLHRFAGLLPLYDPSSLISSDLLACASATGQDFHNHHHHQTSLLPGLSEGCKENAGCSIKEEGVNLMGFAGNLMNTPPSTSNSRLHQTQHPYFDLQSSLPMNPIPIQDINSNPLFYSSHTLQNRRDFDHAYSSGGEVVVFKPEPLSLSLSSHPTYQNSHQLELNLQRYGSGLYPSPIVGSMSNNISRSSVPLGPFTGYASILKGSRFLRPAQQLLEEFCEIWCQGNYSEKLEADSGLMDSPSETLSGIVDDSFSSGGDGGESRRKKSKLISMLDEVYRRYKQYYQQMQEVVASFECVSGLGNAAPYANLAIISMSKHFRCLKNAISDQLQITKAPSNYCQKYVPNSGFLDQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKVMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQKPPPREDRTANRTSDHRPSTNSLATDNASKSTQLVQDIPSKRTRNELQNLAMANEGQLNLSYNNLSSQDPQMDVNVSIAGGNGGVSLTLGLHQNNVIDLSEPFPINGVQRYGLGIEDNINGDGYVMGGFEAQSRHFARDVIGGQLLHDFVG 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38296452 38299660 - Bma020049.1 Bma04g01264 81633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01264 615 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 585 - -
Bma04g01264 615 SMART HOX_1 390 454 IPR001356 GO:0003677
Bma04g01264 615 MobiDBLite consensus disorder prediction 458 499 - -
Bma04g01264 615 Gene3D - 393 455 - -
Bma04g01264 615 SUPERFAMILY Homeodomain-like 392 457 IPR009057 -
Bma04g01264 615 CDD homeodomain 390 451 IPR001356 GO:0003677
Bma04g01264 615 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 40 585 - -
Bma04g01264 615 Pfam Associated with HOX 236 361 IPR006563 -
Bma04g01264 615 MobiDBLite consensus disorder prediction 479 499 - -
Bma04g01264 615 Pfam Homeobox KN domain 407 446 IPR008422 GO:0003677|GO:0006355
Bma04g01264 615 MobiDBLite consensus disorder prediction 458 478 - -
Bma04g01264 615 ProSiteProfiles 'Homeobox' domain profile. 387 450 IPR001356 GO:0003677
Bma04g01264 615 SMART prehox3 231 362 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01264 Bma10g00308 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01264 Bma-Chr4:38296452 Bma04g00527 Bma-Chr4:4641565 8.60E-67 dispersed
Bma10g00308 Bma-Chr10:2842352 Bma04g01264 Bma-Chr4:38296452 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57232 PF07526 POX 3.90E-39 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01264 - - vvi:100266680 756.903