Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01270 CTATCGGTTGATGAAATGTCCCACATTGATCTGGAATCCGGCGGACACCAACGTTCGGTAACGGGAAGTGACGTAAGCGTCGAGGATAGCGTCTACTTCTCCGACGCCGACGAGGATTCCTGCTATTCTCAGTTCTTCTCGCCAAACGGCGGTTCTTACGACGAGTACATGTTCGCCCTCGGCTTCGCCGGGATCCTTTCGGCTTCTCAAAGAGCGTCATCGGCGGCGGATTCTTCGGTGAAAGTCGAAATCGAAAGTGGGGTAGCTGAAATCAAGGCGCATTTGGCTAAAGTAGAGAGAGATTGCAGAATTTGTCATCTGGGTTTGGAAAGTAACAGTCGGGAGTCCGGCGTTCCGATCGAATTAGGCTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCCGAGACCTGGTTCAAAATCAAAGGAAATAAGATGTGCGAGATTTGTCATTCGATTGCTCGGAATGTTCTGGGAGCCCATGAGATTGAGCTAATGGAGCGGACCAACGAGGCCGGCAATGCCTCCTCAATTGCATCGGCTCCGGCCCCTCCTGCAGAGAGGCAAAGGTTCTGGAGTGGACGTAGGTTCCTGAATTTTCTGCTTGCCTGTGTGGTGTTTGCATTTGTCATTTCATGGCTCTTCCACTTCAATGTTCAATCATAG 675 50.96 LSVDEMSHIDLESGGHQRSVTGSDVSVEDSVYFSDADEDSCYSQFFSPNGGSYDEYMFALGFAGILSASQRASSAADSSVKVEIESGVAEIKAHLAKVERDCRICHLGLESNSRESGVPIELGCSCKEDLAAAHKHCAETWFKIKGNKMCEICHSIARNVLGAHEIELMERTNEAGNASSIASAPAPPAERQRFWSGRRFLNFLLACVVFAFVISWLFHFNVQS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38827084 38828672 + Bma020056.1 Bma04g01270 81639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01270 224 CDD RING_CH-C4HC3_MARCH 102 154 - -
Bma04g01270 224 PANTHER ZINC FINGER, RING-CH-TYPE 6 223 - -
Bma04g01270 224 PANTHER OS01G0850200 PROTEIN 6 223 - -
Bma04g01270 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 161 IPR013083 -
Bma04g01270 224 MobiDBLite consensus disorder prediction 1 22 - -
Bma04g01270 224 SMART ringv_2 101 154 IPR011016 GO:0008270
Bma04g01270 224 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Bma04g01270 224 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Bma04g01270 224 SUPERFAMILY RING/U-box 99 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00273 Bma-Chr3:2052787 Bma04g01270 Bma-Chr4:38827084 1.90E-59 dispersed
Bma04g01270 Bma-Chr4:38827084 Bma07g01561 Bma-Chr7:51027637 1.16E-45 dispersed
Bma15g00738 Bma-Chr15:14765928 Bma04g01270 Bma-Chr4:38827084 6.80E-09 dispersed
Bma04g01270 Bma-Chr4:38827084 Bma04g01279 Bma-Chr4:39275015 6.77E-164 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01270 - - csv:101218915 323.939