Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01279 ATGTCCCACATTGATCTGGAATCCGGCGGACACCAACGTTCGGTAACGGGAAGTGACGTAAGCGTCGAGGATAGCGTCTACTTCTCCGACGCCGACGAGGATTCATGCTATTCTCAGTTCTTCTCGCCAAACGGCGGTTCTTACGACGAGTACATGTTCGCCCTCGGCTTCGCCGGGATCCTTTCGGCTTCTCAAAGAGCGTCATCGGCGGCGGATTCTTCGGTGAAAGTCGAAATCGAAAGTGGGGTAGCTGAAATCAAGGCGCATTTGGCTAAAGTAGAGAGAGATTGCAGAATTTGTCATCTGGGTTTGGAAAGTAACAGCCGGGAGTCCGGCGTTCCGATCGAATTGGGCTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCCGAGACCTGGTTCAAAATCAAAGGAAATAAGATGTGCGAGATTTGTCATTCGATTGCTCGGAATGTTCTGGGAGCCCATGAGATTGAGCTAATGGAGCGGACCAACGAGGCCGGCAATGCCTCCTCAATTGCATCGGCTCCGGCCCCTCCTGCAGAGAGGCAAAGGTTCTGGAGTGGACGTAGGTTCCTGAATTTTCTGCTTGCCTGTGTGGTGTTTGCATTTGTCATTTCATGGCTCTTCCACTTCAATGTTCAATCATAG 660 51.36 MSHIDLESGGHQRSVTGSDVSVEDSVYFSDADEDSCYSQFFSPNGGSYDEYMFALGFAGILSASQRASSAADSSVKVEIESGVAEIKAHLAKVERDCRICHLGLESNSRESGVPIELGCSCKEDLAAAHKHCAETWFKIKGNKMCEICHSIARNVLGAHEIELMERTNEAGNASSIASAPAPPAERQRFWSGRRFLNFLLACVVFAFVISWLFHFNVQS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39275015 39276588 - Bma020069.1 Bma04g01279 81648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01279 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 156 IPR013083 -
Bma04g01279 219 PANTHER OS01G0850200 PROTEIN 2 218 - -
Bma04g01279 219 SMART ringv_2 96 149 IPR011016 GO:0008270
Bma04g01279 219 Pfam RING-variant domain 97 148 IPR011016 GO:0008270
Bma04g01279 219 PANTHER ZINC FINGER, RING-CH-TYPE 2 218 - -
Bma04g01279 219 SUPERFAMILY RING/U-box 94 151 - -
Bma04g01279 219 ProSiteProfiles Zinc finger RING-CH-type profile. 89 155 IPR011016 GO:0008270
Bma04g01279 219 CDD RING_CH-C4HC3_MARCH 97 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01279 Bma-Chr4:39275015 Bma07g01561 Bma-Chr7:51027637 1.11E-45 dispersed
Bma04g01270 Bma-Chr4:38827084 Bma04g01279 Bma-Chr4:39275015 6.77E-164 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01279 - - csv:101218915 323.939