Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01347 ATGGGAAAAGTTTGCCCTGACCCACTTCCTCTGCAGGGGAAATGGAAGAGCCACTTCCTCTGCGCTCTCCTGTTTGTTGAGTTTTTGGCTCTCACCTTTCAACTTGCCTCAGGAGAGCCGGGGGAGGGAGTGATTATCACTGTAGAAGATTATCGAACGCTGACGGCGTTCAAGAATGAACTTATTGATTTCAGAGGAGTTCTTCGTAGCTGGAACGACAGTGGATTCGGAGCTTGTTCTGGTGGGTGGGTCGGAATCAAGTGTGTTAATGGACAGGTTATAGCAATTCAGCTTCCATGGAAGAGACTCGGCGGCCGAATTTCCGACAAAATCGGACAGCTGCAAGAGCTTCGTAAGCTCAGTCTCCATGATAATCTTCTTTCTGGTTCTCTTCCTTCCTCCCTGGGCTCTCTCTCTAAACTCAGAGGGATTTACCTTTTTAATAATCAACTATACGGGTCTATTCCTCCTTCAATCGGCCATTGCTCTGTTCTTCAAACTCTGGATTTAAGCAATAATTCACTCACCGGAATAATACCTCCGGCTATTGCAAACTCTACCAGACTATACAGACTGAATCTTGGCTACAATTCATTGTCGGGTTCTATCCCTAGTAGCCTACTCCTCTCTCCTTCGCTCACAATCCTCTCTCTCCACCACAACAATATATCTGGTCAAATTCCAAATAGCTGGGGTGGGTCTGGAAATGGAAGCGACCGCCTTCAAATTTTGAAACTTCATCATAACCATCTCTTTGGTGGTATCCCAAATTCTCTGAGTACATTGAGTTTCGTTGAAGAGATTTCTCTTAGCCATAATCAGCTTTCTGGTTCCTTACCCAGTGAGCTAGGCAAGCTTACTCGCCTCCGACTGCTTGATTCATCGACCAATATGATTGAAGGAACATTTCCAGACAGCTTTTTCAACCTCTGCTCTCTTGTTTCGTTGAATCTCGAAGGCAATAACTTTAATGGAAAAATTCCTGATTCGTTCGTTAGATTACAGAATCTCTCGATTATCAACCTCAAAAACAATCAGTTCCATGGGGAGATCCCTGCGAATATTGGAAATCTATCCTTAATCAGTCAGCTTGACTTCTCCGAAAATAACTTCACCGGAGGAATTCCGGCTTCGATCAGCAGTCTGGCCAATCTTACTTCTTTTAATGTCTCCTACAATAATCTCTCCGGCCCTGTTCCACTGTCCCTCTCGAAGAAATTCAATTCCAGCTCTTTTGCGGGGAATCTTCAGCTATGTGGGTATAGCCCTTCGCTACCATGTCCTTCTCAATTGCCGCTAAATCTTCCAGCGCTAGAAACATCAACAAAGCATCGCGGGAAACTGAGTACAAAGGACATAATTCTGATAGCAGTTGGGGCGCTTCTAGTGTTACTACTCCTATTTTGCTGCATATTGGTCTGCTGTTTGGTGGGCAAGAAAAATAATGGTAAAATCTCCAAACAGGATACTTCAAGGTGCAGTGGGAAAGCAATTCCGGCCGGCACTGAAATCGGAACCGGCCAGGCAGGTGGAAAGCTAGTCCATTTCGACGGGCCATTCGTGTTTACAGCAGATGATCTCCTTTGTTCAACTGCAGAGATAGTGGGTAAAAGCGCGTACGGGACAGCTTACAAAGCGACATTGGAAGACGAAAATGTAGTTGCAGTGAAGAGACTGAGGGAGAAGACGACTAAAGTGCAGAAGGAATTCGAGCATGAAGTTGCAGAAATTGGGAAGATTCGCCATCCAAATCTTCTATCCCTTAGAGCTTACTACTTGGGTCCTAAAGGAGAGAAGCTTCTTGTTTTTGATTACATGCCCAATGGTAGTCTGGCTTCCTTCCTCCATGCTCGAGGGCAGGAGAGCTTAATCGATTGGGCTACGAGGATGAAAGTAGCTGTGGGAATCACTCGAGGACTCAGCTACCTCCACACAGAGGAAATCAACATTATCCATGGAAATCTGACCTCAAGCAACGTATTTCTGGACGAGAAATCAAACGCCCACATCGCAAATTTCGGCCTCGCGCGTCTCATGACCTCCGCCGCAAACACCTACGTGATCGCTACAGCTGGAACTCAAGGCTACAACGCCCCCGAGCTGTCTAAGACCAAAAAGACCACCTTAAAAACGGATATCTACGGCCTCGGAGTGATCATTCTGGAGCTCTTGACCGGAAAATCCCCCGGCGAACCACTGAACGGAATGGATTTACCTCAGTGGGTCGCTTCGATTGTGAAGGAGGAGTGGACGAATGAAGTTTTTGATTCGGAACTGATGAGGGACACACCCACAATTGGCGATGAATTGCTTGACACGTTGAAATTGGCTCTTCATTGCGTGGATCCCTCGCCGGCTGCCCGGCCAGACGTGCAGCAAGTTCTCGAGCAGTTGGAGGAGATTAAGCCAGAGATTGATTCTGTGCCTGCGGAAGATGATGCTCACGCCCCTTCGATACACAAGCACAATCAAAGGATCAATCAAAGCTCCTAA 2493 46.69 MGKVCPDPLPLQGKWKSHFLCALLFVEFLALTFQLASGEPGEGVIITVEDYRTLTAFKNELIDFRGVLRSWNDSGFGACSGGWVGIKCVNGQVIAIQLPWKRLGGRISDKIGQLQELRKLSLHDNLLSGSLPSSLGSLSKLRGIYLFNNQLYGSIPPSIGHCSVLQTLDLSNNSLTGIIPPAIANSTRLYRLNLGYNSLSGSIPSSLLLSPSLTILSLHHNNISGQIPNSWGGSGNGSDRLQILKLHHNHLFGGIPNSLSTLSFVEEISLSHNQLSGSLPSELGKLTRLRLLDSSTNMIEGTFPDSFFNLCSLVSLNLEGNNFNGKIPDSFVRLQNLSIINLKNNQFHGEIPANIGNLSLISQLDFSENNFTGGIPASISSLANLTSFNVSYNNLSGPVPLSLSKKFNSSSFAGNLQLCGYSPSLPCPSQLPLNLPALETSTKHRGKLSTKDIILIAVGALLVLLLLFCCILVCCLVGKKNNGKISKQDTSRCSGKAIPAGTEIGTGQAGGKLVHFDGPFVFTADDLLCSTAEIVGKSAYGTAYKATLEDENVVAVKRLREKTTKVQKEFEHEVAEIGKIRHPNLLSLRAYYLGPKGEKLLVFDYMPNGSLASFLHARGQESLIDWATRMKVAVGITRGLSYLHTEEINIIHGNLTSSNVFLDEKSNAHIANFGLARLMTSAANTYVIATAGTQGYNAPELSKTKKTTLKTDIYGLGVIILELLTGKSPGEPLNGMDLPQWVASIVKEEWTNEVFDSELMRDTPTIGDELLDTLKLALHCVDPSPAARPDVQQVLEQLEEIKPEIDSVPAEDDAHAPSIHKHNQRINQSS 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46162121 46164689 - Bma020195.1 Bma04g01347 81716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01347 830 Pfam Leucine Rich Repeat 312 333 IPR001611 GO:0005515
Bma04g01347 830 Pfam Protein tyrosine and serine/threonine kinase 532 798 IPR001245 GO:0004672|GO:0006468
Bma04g01347 830 SUPERFAMILY Protein kinase-like (PK-like) 532 804 IPR011009 -
Bma04g01347 830 CDD STKc_IRAK 535 801 - -
Bma04g01347 830 Pfam Leucine rich repeat 165 223 IPR001611 GO:0005515
Bma04g01347 830 Gene3D Phosphorylase Kinase; domain 1 535 606 - -
Bma04g01347 830 Gene3D Transferase(Phosphotransferase) domain 1 607 822 - -
Bma04g01347 830 SMART LRR_typ_2 114 137 IPR003591 -
Bma04g01347 830 SMART LRR_typ_2 211 234 IPR003591 -
Bma04g01347 830 SMART LRR_typ_2 334 358 IPR003591 -
Bma04g01347 830 SMART LRR_typ_2 310 333 IPR003591 -
Bma04g01347 830 SMART LRR_typ_2 262 286 IPR003591 -
Bma04g01347 830 SMART LRR_typ_2 138 162 IPR003591 -
Bma04g01347 830 MobiDBLite consensus disorder prediction 804 820 - -
Bma04g01347 830 ProSiteProfiles Protein kinase domain profile. 529 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g01347 830 MobiDBLite consensus disorder prediction 804 830 - -
Bma04g01347 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 13 807 - -
Bma04g01347 830 SUPERFAMILY L domain-like 86 435 - -
Bma04g01347 830 Gene3D Ribonuclease Inhibitor 47 237 IPR032675 -
Bma04g01347 830 Pfam Leucine rich repeat N-terminal domain 50 88 IPR013210 -
Bma04g01347 830 Gene3D Ribonuclease Inhibitor 238 430 IPR032675 -
Bma04g01347 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 13 807 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01347 Bma-Chr4:46162121 Bma08g01137 Bma-Chr8:50320801 0 dispersed
Bma04g01347 Bma-Chr4:46162121 Bma04g00111 Bma-Chr4:880559 1.28E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66476 PF07714 PK_Tyr_Ser-Thr 2.40E-38 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01347 - - jre:108982299 1051.97