Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01367 | ATGATTGCACAGATACGAGTTGCAAGGCCACCTGCCGAATGTAAGGGAAGGAATCAGTTGCTTCCTCGATATTGGCCCAGGATTACAGATCAAGAATTACAACAGTTATCCGGATCTTCAAATTCAACTGTTGTGCCACTGTTTGAAAAGATGTTAAGTGCTAGTGATGCCGGTCGAATTGGTCGTTTGGTGGTCCCAAAAGCATGCGCGGAAGCATATTTTCCTCCCATCTCTCAACCAGAGGGTCTTCCCATAAGAATTCAAGATGTAAAAGGAAGAGAATGGGTCTTCCAGTTTAGATTTTGGCCGAATAATAACAGCAGGATGTATGTTTTGGAGGGTGTGACTCCCTGCATTCAATCAATGCAGTTGCAAGCTGGCGATACTGTGACTTTCAGTCGCATGGATCCTGAAGGAAAACTTATTATGGGATTTCGTAAAGCATCAGCTTCTGTCGCCACACAGGATAGCCCTCTATCTACTATTCCCTCTGGTGCTCATTCAAGTGAAACTTTCTTTTCCGGTGCTTTTGATAACCTCTCCATTGTAAGTGGTCATTCTAGCCTTCTTCAATACCTTAAGGAAAGTGGAGGCTCACAGTTGAATGCATTTCCCAAACACTTGATTCCAGTCAGTGCCGATATGAGCTATTATAGAACGGAGAAGCTTGATGACAGAACAAAGGAGCCCTTACTACTGCCTTCTGGTCTCGTACCAGAAAGGAAAAAAGCTCGTAATATTGGGTCCAAAAGTAAGAGGTTGCTCATTGATAACCAAGATTCCTTGGAGCTGAAACTTACCTGGGAAGAAGCGCAGGATTTGCTTTGCCCGCCCCCTTCAGTCAAACCTAGTAAAGTCATGATTGAGGATCATGAATTTGAAGAATATGAAGACCCACCAATCTTTGGGAAGAGGAGCATTTTTGTTGCCCGTTCGAATGGGGAACAAGAGCAGTGGGTCCAGTGTGATGATTGCTCAAAATGGCGAAGGCTGCCAATTGATGTTCTTCTGCCCTTCAAGTGGACATGTGAAGACAATGTTTGGGATCAAAACAGGAAGTCATGTTCCGCTGCAGATGAATTGACCCCGATGGAAATGGAAAACTTTTGCAAATTGGTCAAGGACTTCAAGAGACGAAGATTTATGCTAAGCCAAAGATCTCCCCAGGATTATGAATCTTCCGGTTTGGACGCTTTGGCCAATGCTGCAATTCTAGGGGACAACGATGGTGATCCAGGCACTGCATCCATTGCAACAACAACAAAACACCCAAGGCATCGTCCTGGTTGTTCCTGCATTGTCTGTATCCAGCCCCCCAGTGGCAAGGGCAAGCACAAGCCTTCATGCACTTGCAATGTGTGCATGACAGTTAAACGCCGTTTCAAAACCTTGATGATGCGCAAGAAAAAGCGTCAATCAGATCGCGAAGCAGAGATTGCACAGAGAAATCAACACAAATGGGGCCTAAGAGAGGAACCGGAACTAGAAACCACCTCAAGGCATGCATCCTCGAGCATTGATCCTTCAGAGAATGAAACCCGACCAACGCACCAAGAGCTAGAATCCAAAAACCAAAACAAAGTTGGGGAAACAGAGAAGAGCCAATTAGATTTGAATTGCCATCCCGAAGAAGACGAGCTACTTGGGGGATCAAAACGTGTTAGTATGACGAGTCTTCTCCAAGTTGCAAGCCTCCCTTTGGAAATGTATCTAAAACAGAATGGCCTCACAAGTTTGATATCAGAGGCTCCAACAAGTCCAACATCCAATGCTCTGCCACCAACACAAGGTGCTAATGAGATTGATGGAGAGCAAGAAAGTGGCGGAGAAGAATATTGCGAACCCGAGCAGGGCCGAAACAATCCGCAATAG | 1872 | 45.41 | MIAQIRVARPPAECKGRNQLLPRYWPRITDQELQQLSGSSNSTVVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGREWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASASVATQDSPLSTIPSGAHSSETFFSGAFDNLSIVSGHSSLLQYLKESGGSQLNAFPKHLIPVSADMSYYRTEKLDDRTKEPLLLPSGLVPERKKARNIGSKSKRLLIDNQDSLELKLTWEEAQDLLCPPPSVKPSKVMIEDHEFEEYEDPPIFGKRSIFVARSNGEQEQWVQCDDCSKWRRLPIDVLLPFKWTCEDNVWDQNRKSCSAADELTPMEMENFCKLVKDFKRRRFMLSQRSPQDYESSGLDALANAAILGDNDGDPGTASIATTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCMTVKRRFKTLMMRKKKRQSDREAEIAQRNQHKWGLREEPELETTSRHASSSIDPSENETRPTHQELESKNQNKVGETEKSQLDLNCHPEEDELLGGSKRVSMTSLLQVASLPLEMYLKQNGLTSLISEAPTSPTSNALPPTQGANEIDGEQESGGEEYCEPEQGRNNPQ | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 46933194 | 46938605 | - | Bma020225.2 | Bma04g01367 | 81736 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01367 | 623 | MobiDBLite | consensus disorder prediction | 465 | 549 | - | - | |
Bma04g01367 | 623 | MobiDBLite | consensus disorder prediction | 512 | 549 | - | - | |
Bma04g01367 | 623 | ProSiteProfiles | Zinc finger CW-type profile. | 313 | 363 | IPR011124 | GO:0008270 | |
Bma04g01367 | 623 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 | 4 | 585 | - | - | |
Bma04g01367 | 623 | Pfam | B3 DNA binding domain | 48 | 147 | IPR003340 | GO:0003677 | |
Bma04g01367 | 623 | ProSiteProfiles | B3 DNA-binding domain profile. | 48 | 149 | IPR003340 | GO:0003677 | |
Bma04g01367 | 623 | Gene3D | - | 309 | 362 | - | - | |
Bma04g01367 | 623 | MobiDBLite | consensus disorder prediction | 580 | 623 | - | - | |
Bma04g01367 | 623 | Gene3D | - | 26 | 152 | IPR015300 | - | |
Bma04g01367 | 623 | SUPERFAMILY | DNA-binding pseudobarrel domain | 45 | 147 | IPR015300 | - | |
Bma04g01367 | 623 | CDD | B3_DNA | 46 | 147 | IPR003340 | GO:0003677 | |
Bma04g01367 | 623 | MobiDBLite | consensus disorder prediction | 469 | 498 | - | - | |
Bma04g01367 | 623 | Pfam | CW-type Zinc Finger | 318 | 360 | IPR011124 | GO:0008270 | |
Bma04g01367 | 623 | SMART | B3_2 | 48 | 149 | IPR003340 | GO:0003677 | |
Bma04g01367 | 623 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 4 | 585 | - | - | |
Bma04g01367 | 623 | MobiDBLite | consensus disorder prediction | 580 | 602 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g01367 | Bma-Chr4:46933194 | Bma07g01588 | Bma-Chr7:51165277 | 0 | dispersed | |
Bma04g01367 | Bma-Chr4:46933194 | Bma04g01562 | Bma-Chr4:51641425 | 4.43E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57234 | PF02362 | B3 | 1.30E-15 | CL0405 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01367 | - | - | qlo:115953034 | 946.421 |