Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01367 ATGATTGCACAGATACGAGTTGCAAGGCCACCTGCCGAATGTAAGGGAAGGAATCAGTTGCTTCCTCGATATTGGCCCAGGATTACAGATCAAGAATTACAACAGTTATCCGGATCTTCAAATTCAACTGTTGTGCCACTGTTTGAAAAGATGTTAAGTGCTAGTGATGCCGGTCGAATTGGTCGTTTGGTGGTCCCAAAAGCATGCGCGGAAGCATATTTTCCTCCCATCTCTCAACCAGAGGGTCTTCCCATAAGAATTCAAGATGTAAAAGGAAGAGAATGGGTCTTCCAGTTTAGATTTTGGCCGAATAATAACAGCAGGATGTATGTTTTGGAGGGTGTGACTCCCTGCATTCAATCAATGCAGTTGCAAGCTGGCGATACTGTGACTTTCAGTCGCATGGATCCTGAAGGAAAACTTATTATGGGATTTCGTAAAGCATCAGCTTCTGTCGCCACACAGGATAGCCCTCTATCTACTATTCCCTCTGGTGCTCATTCAAGTGAAACTTTCTTTTCCGGTGCTTTTGATAACCTCTCCATTGTAAGTGGTCATTCTAGCCTTCTTCAATACCTTAAGGAAAGTGGAGGCTCACAGTTGAATGCATTTCCCAAACACTTGATTCCAGTCAGTGCCGATATGAGCTATTATAGAACGGAGAAGCTTGATGACAGAACAAAGGAGCCCTTACTACTGCCTTCTGGTCTCGTACCAGAAAGGAAAAAAGCTCGTAATATTGGGTCCAAAAGTAAGAGGTTGCTCATTGATAACCAAGATTCCTTGGAGCTGAAACTTACCTGGGAAGAAGCGCAGGATTTGCTTTGCCCGCCCCCTTCAGTCAAACCTAGTAAAGTCATGATTGAGGATCATGAATTTGAAGAATATGAAGACCCACCAATCTTTGGGAAGAGGAGCATTTTTGTTGCCCGTTCGAATGGGGAACAAGAGCAGTGGGTCCAGTGTGATGATTGCTCAAAATGGCGAAGGCTGCCAATTGATGTTCTTCTGCCCTTCAAGTGGACATGTGAAGACAATGTTTGGGATCAAAACAGGAAGTCATGTTCCGCTGCAGATGAATTGACCCCGATGGAAATGGAAAACTTTTGCAAATTGGTCAAGGACTTCAAGAGACGAAGATTTATGCTAAGCCAAAGATCTCCCCAGGATTATGAATCTTCCGGTTTGGACGCTTTGGCCAATGCTGCAATTCTAGGGGACAACGATGGTGATCCAGGCACTGCATCCATTGCAACAACAACAAAACACCCAAGGCATCGTCCTGGTTGTTCCTGCATTGTCTGTATCCAGCCCCCCAGTGGCAAGGGCAAGCACAAGCCTTCATGCACTTGCAATGTGTGCATGACAGTTAAACGCCGTTTCAAAACCTTGATGATGCGCAAGAAAAAGCGTCAATCAGATCGCGAAGCAGAGATTGCACAGAGAAATCAACACAAATGGGGCCTAAGAGAGGAACCGGAACTAGAAACCACCTCAAGGCATGCATCCTCGAGCATTGATCCTTCAGAGAATGAAACCCGACCAACGCACCAAGAGCTAGAATCCAAAAACCAAAACAAAGTTGGGGAAACAGAGAAGAGCCAATTAGATTTGAATTGCCATCCCGAAGAAGACGAGCTACTTGGGGGATCAAAACGTGTTAGTATGACGAGTCTTCTCCAAGTTGCAAGCCTCCCTTTGGAAATGTATCTAAAACAGAATGGCCTCACAAGTTTGATATCAGAGGCTCCAACAAGTCCAACATCCAATGCTCTGCCACCAACACAAGGTGCTAATGAGATTGATGGAGAGCAAGAAAGTGGCGGAGAAGAATATTGCGAACCCGAGCAGGGCCGAAACAATCCGCAATAG 1872 45.41 MIAQIRVARPPAECKGRNQLLPRYWPRITDQELQQLSGSSNSTVVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGREWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASASVATQDSPLSTIPSGAHSSETFFSGAFDNLSIVSGHSSLLQYLKESGGSQLNAFPKHLIPVSADMSYYRTEKLDDRTKEPLLLPSGLVPERKKARNIGSKSKRLLIDNQDSLELKLTWEEAQDLLCPPPSVKPSKVMIEDHEFEEYEDPPIFGKRSIFVARSNGEQEQWVQCDDCSKWRRLPIDVLLPFKWTCEDNVWDQNRKSCSAADELTPMEMENFCKLVKDFKRRRFMLSQRSPQDYESSGLDALANAAILGDNDGDPGTASIATTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCMTVKRRFKTLMMRKKKRQSDREAEIAQRNQHKWGLREEPELETTSRHASSSIDPSENETRPTHQELESKNQNKVGETEKSQLDLNCHPEEDELLGGSKRVSMTSLLQVASLPLEMYLKQNGLTSLISEAPTSPTSNALPPTQGANEIDGEQESGGEEYCEPEQGRNNPQ 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46933194 46938605 - Bma020225.2 Bma04g01367 81736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01367 623 MobiDBLite consensus disorder prediction 465 549 - -
Bma04g01367 623 MobiDBLite consensus disorder prediction 512 549 - -
Bma04g01367 623 ProSiteProfiles Zinc finger CW-type profile. 313 363 IPR011124 GO:0008270
Bma04g01367 623 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 585 - -
Bma04g01367 623 Pfam B3 DNA binding domain 48 147 IPR003340 GO:0003677
Bma04g01367 623 ProSiteProfiles B3 DNA-binding domain profile. 48 149 IPR003340 GO:0003677
Bma04g01367 623 Gene3D - 309 362 - -
Bma04g01367 623 MobiDBLite consensus disorder prediction 580 623 - -
Bma04g01367 623 Gene3D - 26 152 IPR015300 -
Bma04g01367 623 SUPERFAMILY DNA-binding pseudobarrel domain 45 147 IPR015300 -
Bma04g01367 623 CDD B3_DNA 46 147 IPR003340 GO:0003677
Bma04g01367 623 MobiDBLite consensus disorder prediction 469 498 - -
Bma04g01367 623 Pfam CW-type Zinc Finger 318 360 IPR011124 GO:0008270
Bma04g01367 623 SMART B3_2 48 149 IPR003340 GO:0003677
Bma04g01367 623 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 585 - -
Bma04g01367 623 MobiDBLite consensus disorder prediction 580 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01367 Bma-Chr4:46933194 Bma07g01588 Bma-Chr7:51165277 0 dispersed
Bma04g01367 Bma-Chr4:46933194 Bma04g01562 Bma-Chr4:51641425 4.43E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57234 PF02362 B3 1.30E-15 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01367 - - qlo:115953034 946.421