Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01404 ATGGTTTTTTCCTCCATGCCAGCTTATCTTGATCCTTCCAACTGGCAACAGCAAACAATCAATCAAATCGGCAGTAGTTCCAGACCTAGCTCTCAACTTCTTCCTCCACAGCCACCACCTCCTCCGCCGCTTCAGCACACTCATGGTGGTGCAACCTCAGGATCCGTCAGACCAGGTTCCATGTCGGAGCGAGCTCGAATGGCTAACGTACCCTTACCGGAAGCAGCCCTGAAATGCCCGCGATGCGAATCTACAAACACTAAGTTTTGTTACTTCAACAATTACAGCCTTACCCAGCCTCGCCATTTTTGTAAGACCTGTAGAAGGTACTGGACCCGAGGAGGAGCTCTTAGAAACGTCCCAGTAGGCGGCGGCTGTCGCCGGAACAAAAGAAGCAAAGGCAGTAGCTCCAAATCGCCGATCAGCTCCGACCACCAATCCGGAGACCCTGGTTCGTCGAGTATGATTTCTTCGAGCAGTGGACGCACTGATATATTAAGCCTGGGACCCCAGATCCCACCTCTAAGATTTATGGCTCCTCTTCATAACCTCAACGAGTTTGCCCCCGGCGAGATCGGCTTAAACTATGGCCTTAATTACAGTACTATTTCTGCACCGATGAGTGGAGCCGGCGACCTAAATTTTCAACTGGGAGTTACTTTAGGCGGTGGTGGAGGAGAAGCTGGGTCTCTTTTAGGCCTAGATCAACAATGGCGGATACAGCAAATGCCGCAGTTTCCTTTTCTTCCCGGATTCGACCCATCAACGGAGCTGTTTGAAAGGCCGTCGAGTTTAGGGATCAATCACTTGCCCTCAGTGAAAATGGAAGAAACCCAGCAAGATCAAGGGTTTAACTTGGGAAGACAGTTCTTAGGATCAGTTGCAGGAAATGAACAATTCTGGAGTGGCAACAATGCCTGGTCAGATCTTTCTGGTTTCAGCTCTTCTTCTACAACCAGTAATCCTCCTTAA 972 49.69 MVFSSMPAYLDPSNWQQQTINQIGSSSRPSSQLLPPQPPPPPPLQHTHGGATSGSVRPGSMSERARMANVPLPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPISSDHQSGDPGSSSMISSSSGRTDILSLGPQIPPLRFMAPLHNLNEFAPGEIGLNYGLNYSTISAPMSGAGDLNFQLGVTLGGGGGEAGSLLGLDQQWRIQQMPQFPFLPGFDPSTELFERPSSLGINHLPSVKMEETQQDQGFNLGRQFLGSVAGNEQFWSGNNAWSDLSGFSSSSTTSNPP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48718106 48719260 - Bma020280.1 Bma04g01404 81773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01404 323 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Bma04g01404 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 319 IPR045174 GO:0003700|GO:0006355
Bma04g01404 323 MobiDBLite consensus disorder prediction 23 64 - -
Bma04g01404 323 MobiDBLite consensus disorder prediction 135 163 - -
Bma04g01404 323 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 7 319 - -
Bma04g01404 323 MobiDBLite consensus disorder prediction 32 46 - -
Bma04g01404 323 MobiDBLite consensus disorder prediction 121 163 - -
Bma04g01404 323 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Bma04g01404 323 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00291 Bma-Chr3:2194811 Bma04g01404 Bma-Chr4:48718106 5.24E-70 dispersed
Bma04g01404 Bma-Chr4:48718106 Bma07g01538 Bma-Chr7:50903739 2.04E-60 dispersed
Bma04g01399 Bma-Chr4:48605521 Bma04g01404 Bma-Chr4:48718106 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57240 PF02701 zf-Dof 3.10E-32 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01404 - - qsu:112030762 328.946