Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01404 ATGGTTTTTTCCTCCATGCCAGCTTATCTTGATCCTTCCAACTGGCAACAGCAAACAATCAATCAAATCGGCAGTAGTTCCAGACCTAGCTCTCAACTTCTTCCTCCACAGCCACCACCTCCTCCGCCGCTTCAGCACACTCATGGTGGTGCAACCTCAGGATCCGTCAGACCAGGTTCCATGTCGGAGCGAGCTCGAATGGCTAACGTACCCTTACCGGAAGCAGCCCTGAAATGCCCGCGATGCGAATCTACAAACACTAAGTTTTGTTACTTCAACAATTACAGCCTTACCCAGCCTCGCCATTTTTGTAAGACCTGTAGAAGGTACTGGACCCGAGGAGGAGCTCTTAGAAACGTCCCAGTAGGCGGCGGCTGTCGCCGGAACAAAAGAAGCAAAGGCAGTAGCTCCAAATCGCCGATCAGCTCCGACCACCAATCCGGAGACCCTGGTTCGTCGAGTATGATTTCTTCGAGCAGTGGACGCACTGATATATTAAGCCTGGGACCCCAGATCCCACCTCTAAGATTTATGGCTCCTCTTCATAACCTCAACGAGTTTGCCCCCGGCGAGATCGGCTTAAACTATGGCCTTAATTACAGTACTATTTCTGCACCGATGAGTGGAGCCGGCGACCTAAATTTTCAACTGGGAGTTACTTTAGGCGGTGGTGGAGGAGAAGCTGGGTCTCTTTTAGGCCTAGATCAACAATGGCGGATACAGCAAATGCCGCAGTTTCCTTTTCTTCCCGGATTCGACCCATCAACGGAGCTGTTTGAAAGGCCGTCGAGTTTAGGGATCAATCACTTGCCCTCAGTGAAAATGGAAGAAACCCAGCAAGATCAAGGGTTTAACTTGGGAAGACAGTTCTTAGGATCAGTTGCAGGAAATGAACAATTCTGGAGTGGCAACAATGCCTGGTCAGATCTTTCTGGTTTCAGCTCTTCTTCTACAACCAGTAATCCTCCTTAA 972 49.69 MVFSSMPAYLDPSNWQQQTINQIGSSSRPSSQLLPPQPPPPPPLQHTHGGATSGSVRPGSMSERARMANVPLPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPISSDHQSGDPGSSSMISSSSGRTDILSLGPQIPPLRFMAPLHNLNEFAPGEIGLNYGLNYSTISAPMSGAGDLNFQLGVTLGGGGGEAGSLLGLDQQWRIQQMPQFPFLPGFDPSTELFERPSSLGINHLPSVKMEETQQDQGFNLGRQFLGSVAGNEQFWSGNNAWSDLSGFSSSSTTSNPP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48718106 48719260 - Bma020280.1 Bma04g01404 81773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01404 323 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Bma04g01404 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 319 IPR045174 GO:0003700|GO:0006355
Bma04g01404 323 MobiDBLite consensus disorder prediction 23 64 - -
Bma04g01404 323 MobiDBLite consensus disorder prediction 135 163 - -
Bma04g01404 323 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 7 319 - -
Bma04g01404 323 MobiDBLite consensus disorder prediction 32 46 - -
Bma04g01404 323 MobiDBLite consensus disorder prediction 121 163 - -
Bma04g01404 323 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Bma04g01404 323 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01404 - - - qsu:112030762 328.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00291 Bma-Chr3:2194811 Bma04g01404 Bma-Chr4:48718106 5.24E-70 dispersed
Bma04g01404 Bma-Chr4:48718106 Bma07g01538 Bma-Chr7:50903739 2.04E-60 dispersed
Bma04g01399 Bma-Chr4:48605521 Bma04g01404 Bma-Chr4:48718106 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g01000 BCT,CCT 11 163 C2C2-Dof Transcription Factor Family AT1G29160 55.2 1.2e-44 176.4
Bma01g01447 BCT,CCT 12 163 C2C2-Dof Transcription Factor Family AT1G29160 53.2 2.5e-42 168.7
Bma14g01000 BCT,CCT 11 163 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.9e-42 169.1
Bma01g01447 BCT,CCT 12 163 C2C2-Dof Transcription Factor Family AT2G34140 50.9 3.5e-41 164.9
Bma04g01399 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.2 8.0e-42 167.9
Bma04g01404 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.2 8.0e-42 167.9
Bma01g01875 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.4e-38 157.1
Bma01g01875 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 58.4 7.7e-39 158.3
Bma03g00291 . 1 122 C2C2-Dof Transcription Factor Family AT5G02460 55.7 2.1e-36 150.2
Bma01g01875 . 51 210 C2C2-Dof Transcription Factor Family AT3G55370 51.9 3.5e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57240 PF02701 zf-Dof 3.10E-32 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01404 Bma_Chr04 FPKM 16.104889 20.468327 52.047367 55.265877 62.00584 61.183704 55.727184 39.5639 35.915981 37.161606