Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01411 ATCATGGGTGCGATAATTGCCGCCATAGCTGACGGAGTGCTGACGTTTATGTGGATTTTTTGTGCTTCCTCGATTGGGGTTCTTACTGCCGTCGTGTCCTCCGCCGTCGGAGTTTCCGGCCTTCCTCTCCCTTCCATATTCATAACCACTGTCATTATTTTCCTCCTCGTCTTCTTTTTCAACTTCGTCGGCAGCCTCTTGGGTGGGGCTAGCTTCAATCCCACCGGAACCGCCGCCTTCTACGCTGCTGGCCTTGGCCCCGATTCTCTAATTTCCATGGCCCTTCGCTTTCCTGCTCAGGCTGCCGGAGCTGTCGGGGGTGCGCTAGCGATCAAGGAGGTGATGCCGACACAGTACAAACACATGCTTGGCGGTCCTTCTCTGAAAGTTGAGGTCCATTCCGGAGCCATAGCCGAGGCAATTTTGACGTTTTTCATTAGCTTGGCCGTCCTTCTGATCGTGCTCAGAGGCCCCCGCAGCCCGCTTCTCAAGGCCTGGTTTCTGGCCATGACCACCGTTACCTTGATCATCTCTGGATCTTCTTATACAGGACCTTCCATGAATCCTGCAAATGCGTTCGGGTGGGCGTATGTGAACAACAAGCACAATTCCTGGGAGCACTTTTACGTCTACTGGATCAGCCCCTTTGCCGGTGCAATTATAGCCGCTTGGCTGTATCGGGCGGTGTTTGCTGCAGCTGCGCCGGTGAAACAGAAGAAAGCCTGA 726 54.13 IMGAIIAAIADGVLTFMWIFCASSIGVLTAVVSSAVGVSGLPLPSIFITTVIIFLLVFFFNFVGSLLGGASFNPTGTAAFYAAGLGPDSLISMALRFPAQAAGAVGGALAIKEVMPTQYKHMLGGPSLKVEVHSGAIAEAILTFFISLAVLLIVLRGPRSPLLKAWFLAMTTVTLIISGSSYTGPSMNPANAFGWAYVNNKHNSWEHFYVYWISPFAGAIIAAWLYRAVFAAAAPVKQKKA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48871349 48872935 + Bma020289.1 Bma04g01411 81780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01411 241 SUPERFAMILY Aquaporin-like 5 232 IPR023271 -
Bma04g01411 241 Pfam Major intrinsic protein 7 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma04g01411 241 PANTHER AQUAPORIN SIP1-1 2 240 - -
Bma04g01411 241 Gene3D Glycerol uptake facilitator protein. 3 240 IPR023271 -
Bma04g01411 241 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma04g01411 241 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma04g01411 241 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma04g01411 241 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma04g01411 241 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma04g01411 241 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma04g01411 241 PANTHER AQUAPORIN SIP1-1 2 240 IPR044222 GO:0015250
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01411 Bma-Chr4:48871349 Bma08g01152 Bma-Chr8:50551770 5.02E-12 dispersed
Bma04g01411 Bma-Chr4:48871349 Bma04g01419 Bma-Chr4:48950167 6.20E-28 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01411 K09875 - zju:107404040 334.339