Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01430 ATGGAGTTGTTACAGTCATTGGACGTTCAGACTCTTCTGGGTTTAGCTGTAGCTCTTCTAGCCATTGGAGCTGGAGCTCTCTATCTCCTTTTCTTTTCCAATAAATCAACATCTAGAGGCTGCTTAGATCCTGAGAGATTCAAGGAGTTTAAACTTATCAAGCGCACAAAGCTGAGCCATAATGTGGCAAAATTTACATTTGCTCTTCCAAAACCAACATCAATTTTGGGTCTTCCCATTGGACAGCACTTAAGTTGCAGAGGCAAAGACAGTCAAGGAGAAGAGGTTATTAAACCATACACTCCTACCACTTTGGACTCTGATGTGGGATATTTTGAACTGGTCATAAAAATGTATCCTCAAGGAAGAATGTCACACCATTTTAGAGAGATGCGAGTCGGGGATCATCTTTCTGTCAAGGGACCAAAGGGACGTTTCAAGTATCGACCTGGTCAAGTTAGAGCATTTGGAATGCTTGCTGGTGGCTCTGGCATTACACCAATGTTCCAAGTTGCTCGTGCAATACTGGAGAACCCGGATGACAAAACGAACATACACCTCATATATGCCAATGTTACGTATGAAGATATACTTTTGAAGGAAGAGATTGATTTGCTTGCCTCTAGATATCCAGATCGCTTCAAGATCTACTATGTCTTGAATCAGCCTCCCGAGAGTTGGGACGGAGGCGTCGGTTTCGTATCGAAGGAAATGATTCAAGCCCACTGCCCTGCACCTGGAGCCGATATTCAGATTCTAAGGTGCGGTCCTCCACCGATGAACAAGGCCATGGCAGCTCACCTTGAAGCGCTCGGATATTCGCCGGAGATGCAGTTTCAGTTCTGA 846 44.8 MELLQSLDVQTLLGLAVALLAIGAGALYLLFFSNKSTSRGCLDPERFKEFKLIKRTKLSHNVAKFTFALPKPTSILGLPIGQHLSCRGKDSQGEEVIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDHLSVKGPKGRFKYRPGQVRAFGMLAGGSGITPMFQVARAILENPDDKTNIHLIYANVTYEDILLKEEIDLLASRYPDRFKIYYVLNQPPESWDGGVGFVSKEMIQAHCPAPGADIQILRCGPPPMNKAMAAHLEALGYSPEMQFQF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49302727 49310754 - Bma020314.1 Bma04g01430 81799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01430 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Bma04g01430 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Bma04g01430 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Bma04g01430 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Bma04g01430 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Bma04g01430 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Bma04g01430 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Bma04g01430 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 IPR001834 GO:0016491
Bma04g01430 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491
Bma04g01430 281 Gene3D - 139 281 IPR039261 -
Bma04g01430 281 Gene3D Translation factors 40 138 - -
Bma04g01430 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 281 - -
Bma04g01430 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491
Bma04g01430 281 CDD cyt_b5_reduct_like 50 281 - -
Bma04g01430 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 277 IPR039261 -
Bma04g01430 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01430 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212931 471.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01430 Bma10g00255 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01430 Bma-Chr4:49302727 Bma07g00307 Bma-Chr7:3744683 1.70E-153 dispersed
Bma06g01060 Bma-Chr6:47438991 Bma04g01430 Bma-Chr4:49302727 1.18E-65 transposed
Bma10g00255 Bma-Chr10:2354021 Bma04g01430 Bma-Chr4:49302727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01430 Bma_Chr04 FPKM 9.011427 9.667643 7.475573 9.104373 17.396786 18.006416 20.223303 9.877629 9.104737 9.489698