Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01459 ATGTCAGATTTCAGAACGCTTGAGCAATCTCTTGGATTTCACGTAGAGAATGCTGTTGAACTTTCTAGAAATGCTGTTTATAATCAGATGAAGTCAAGTAATCCAATTCTAGGTACAGATAGCCAATTTAACTCTTTAAACAAGACATTAGACTTGCCAAAGGACAGACACCCGGATCCTGTTTCCACATCCATCACTCAACGTGAGAATTGGGGGGAGTCTAACATGGCGGATGGCAGCCCGATGACTGATACTTCAACGGATGACACTGATGACAAAAATCAGAGGTTTGATAGAAATCAATTAATTTTGGGTGGAGCATCCGATTCAAATAACGCATCAAAAGAAAAGTCGGGAGATCAAAAGACATTGCGCAGACTTGCTCAAAATCGTGAAGCTGCTAGAAAAAGCAGGTTAAGGAAAAAGGCTTATGTACAACAGCTAGAAAGCAGCAGGCTGAAGTTGACCCAGCTGGAGCAGGAACTGCAGCGGGCACGTCAACAGGGAATATTTATTTCGAGTTCAGGAGATCAATCACATTCGATGAGTGGAAACGGTGCATTAGCCTTCGACGTAGAATATTCTCGTTGGCTAGAAGAGCATAACAGGCAAGTGAATGAGTTGAGGACGGCGGTAAATTCTCACGTGGGAGACACCGAACTGCATACTATTGTCGATAACGTCACCGTACAGTTTGACGACATATTCAGGTTGAAAGGCATTGCGGCCAAAGCTGACGTTTTCCACATTTTGTCCGGAATGTGGCAAACCCCTGCCGAGAGGTGTTTCATGTGGATTGGTGGGTTCCGCTCATCTGAGCTTCTCAAGCTTCTTGCGAGTCAATTGGAACCCCTGACGGAGCAGCAGGCGATGGACATCTGCAAGCTCCAGCAGTCGTCACAACAGGCCGAAGACGCTCTTTCCCAAGGAATGGAAGCATTGCAGCAGTCCTTGGCCGAGACGCTGGCCAGTGGGTCCCCCGCATCTTCGGGGCCATCCGGCAACGTGGCAAATTACATGGGCCAAATGGCGATGGCCATGGGAAAGCTAGGAACTCTCGAAGGCTTCCTTCGCCAGGCCGATAATCTTCGACAACAAACGCTCCAGCAAATGCACAGGATTTTGACGATTCGGCAATCTGCTCGGGCTTTTCTCGCGATAAATGACTACTTTTCTCGACTCCGAGCCCTCAGTTCGCTCTGGCTGGCCAGGCCACGAGATTGA 1224 48.2 MSDFRTLEQSLGFHVENAVELSRNAVYNQMKSSNPILGTDSQFNSLNKTLDLPKDRHPDPVSTSITQRENWGESNMADGSPMTDTSTDDTDDKNQRFDRNQLILGGASDSNNASKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYSRWLEEHNRQVNELRTAVNSHVGDTELHTIVDNVTVQFDDIFRLKGIAAKADVFHILSGMWQTPAERCFMWIGGFRSSELLKLLASQLEPLTEQQAMDICKLQQSSQQAEDALSQGMEALQQSLAETLASGSPASSGPSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTIRQSARAFLAINDYFSRLRALSSLWLARPRD 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 50090361 50228309 - Bma031151 Bma04g01459 81828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01459 407 Coils Coil 141 168 - -
Bma04g01459 407 Pfam Seed dormancy control 204 280 IPR025422 GO:0006351|GO:0043565
Bma04g01459 407 SUPERFAMILY Leucine zipper domain 122 165 IPR046347 GO:0003700|GO:0006355
Bma04g01459 407 MobiDBLite consensus disorder prediction 63 84 - -
Bma04g01459 407 Pfam bZIP transcription factor 122 162 IPR004827 GO:0003700|GO:0006355
Bma04g01459 407 SMART brlzneu 118 181 IPR004827 GO:0003700|GO:0006355
Bma04g01459 407 CDD bZIP_HBP1b-like 122 174 - -
Bma04g01459 407 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 125 140 IPR004827 GO:0003700|GO:0006355
Bma04g01459 407 PANTHER TRANSCRIPTION FACTOR TGA9 27 407 - -
Bma04g01459 407 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 120 164 IPR004827 GO:0003700|GO:0006355
Bma04g01459 407 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 27 407 - -
Bma04g01459 407 MobiDBLite consensus disorder prediction 47 125 - -
Bma04g01459 407 Gene3D - 121 173 - -
Bma04g01459 407 ProSiteProfiles DOG1 domain profile. 187 404 IPR025422 GO:0006351|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01459 Bma10g00236 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01459 Bma-Chr4:50090361 Bma15g00081 Bma-Chr15:916771 3.77E-154 dispersed
Bma07g01446 Bma-Chr7:50182347 Bma04g01459 Bma-Chr4:50090361 5.13E-46 dispersed
Bma10g00236 Bma-Chr10:2162224 Bma04g01459 Bma-Chr4:50090361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57247 PF14144 DOG1 4.70E-28 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01459 K14431 - mnt:21386980 623.239