Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01474 GATAGGCCTTTGTGGTTCCCTGGTAGCACCCCTCCGCCGTGGCTCGACGGCTCCCTCCCCGCAGACTTTGGTTTTGATCCTCTTGGTCTAGGGTCTGATCCGGAGACCCTGAGATGGAACGTGCAATCGGAGATAGTTCACTGCAGATGGGCCATGTTAGGCGCTGCCGGTATTTTCATCCCCGAGCTTCTCACCAAGCTAGGTGTTCTCAATACTCCGTCGTGGTACACTGCCGGTGAGCTAGACTACTTCACCGACACTACCACTCTTTTCATAATCGAGCTCATTTTGATCGGATGGGCGGAGGGGAGAAGATGGGCTGACATCCTCAAGCCTGGAAGCGTCAACACCGACCCCATCTTCCCCAACTACAAGCTCACAGGAACCGACGTCGGATACCCCGGCGGCCTCTGGTTCGACCCTCTCGGGTGGGGAACCGGATCACCGGAAAAAATCAAAGAGCTGAGAACAAAGGAGATCAAGAACGGTAGATTGGCAATGTTGGCCGTGATAGGTGCATGGTTCCAACACATCTACACCGGAACTGGCCCCATCGACAACCTCTTCGCCCACCTCGCCGATCCCGGCCACGCCACCGTTTTCGCTGTAAGTAGACCATCACTCATCACTGAATCTAACAATTATTTATACATTTATTCCAATTGA 666 53.75 DRPLWFPGSTPPPWLDGSLPADFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGVLNTPSWYTAGELDYFTDTTTLFIIELILIGWAEGRRWADILKPGSVNTDPIFPNYKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVIGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSRPSLITESNNYLYIYSN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 50517231 50517986 + Bma020379.1 Bma04g01474 81843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01474 221 Pfam Chlorophyll A-B binding protein 11 177 IPR022796 -
Bma04g01474 221 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 206 IPR001344 GO:0009765|GO:0016020
Bma04g01474 221 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 206 - -
Bma04g01474 221 Gene3D Chlorophyll a/b binding protein domain 12 197 - -
Bma04g01474 221 SUPERFAMILY Chlorophyll a-b binding protein 2 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01474 Bma-Chr4:50517231 Bma08g00227 Bma-Chr8:2793852 1.17E-68 dispersed
Bma10g00275 Bma-Chr10:2490354 Bma04g01474 Bma-Chr4:50517231 4.38E-142 transposed
Bma14g00718 Bma-Chr14:7896141 Bma04g01474 Bma-Chr4:50517231 6.80E-51 transposed
Bma10g00226 Bma-Chr10:2039595 Bma04g01474 Bma-Chr4:50517231 5.61E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01474 K08908 - qsu:112001492 414.075