Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01490 ATGGCTGAGCGCGGCGGATTCGGACGTGGATTTGGAGGTAGAGGCGGTCGCGGTGGAGACCGCGGCCGTGGGGGGCGTCGCCGCACTGCCGGGAGACGGGACGAGGAGGAGAAATGGGTTCCAGTGACGAAACTCGGCCGCTTGGTGAAGGATGGAAAGATTCAGTCTATGGAGCAAATCTACCTCCATTCGCTTCCAGTGAAAGAGCATCAGATCGTTGATTTGCTGATTGGCCCTAGCCTGAAAGATGAAGTAATGAAGATAATGCCAGTTCAGAAGCAGACCAGAGCTGGACAGCGGACCCGGTTCAAGGCCTTTGTCGTCGTTGGAGACAATAACGGTCATGTTGGTTTGGGAGTCAAGTGTAGTAAGGAGGTTGCTACTGCTATTCGTGGAGCTATTATATTGGCCAAGCTTTCGGTTATTCCTGTGAGAAGGGGATACTGGGGGAACAAGATTGGTAAGCCTCATACTGTTCCTTGTAAGGTCACCGGTAAATGTGGATCTGTTACTGTCCGTATGGTGCCGGCGCCGCGAGGTGCTGGTATTGTAGCTGCTCGTGTTCCGAAGAAGGTGTTGCAGTTTGCTGGAATTGAAGATGTTTTTACATCTTCTAGGGGATCAACTAAAACTCTGGGTAACTTCGTCAAGGCTACATTCGATTGCCTTCTGCAAACCTATGGCTTCCTGACACCCGAGTTTTGGAAGGAGACTCGCTTCACAAAATCCCCATTCCAAGAGCACACAGATCTATTGGCAAAACCCACTGCCAAGGCTCTAGTTCTTCGCAACCAATCCTGTAATTTTCTGTGTTTTTTTTTGTATTTTGGTTCGATTAATCTCTTCTTGTTCTTATTCTTCTCCGTCTCCTTGTTGTTGTTAGCTTCGTTGTTCTGCGTGAATTCGCTCGCGTTCGAGGTTGAATTCGTTTTTTGTTTAGAGCATAGGAGCTACATTAAGCACAATTGTCCCAAAGCCGACAAAAAAGACGTCACTGTCGTCATTTGTCCGCTCTGTGCAAATGGAGTTCGTCTAATTCCCGATGAAGATCCGAACATTACATGGGACAGACACGTCAACTCCGAATGCGATCCATCAAATTACGAGAAAGCGACGAAGAAGAAAAAGTGCCCGGTTCCCGGCTGCAGGGAAATCTTAACATTCTCAAACACGATTAAGTGCAGGGATTGCTTGGTAGACCATTGTTTGAAGCACAGATTTGGTCCCGACCATAAATGTCCTGGACCGAAGAAACCAGAAGCAAGTTTTCCATTTATTGGTCTTTTAAGTCGGAGTCTAAAAGAAGATCCGAAGCCTAATCGTGGACCTAAGTCATCTTCTTCGCCTAAGTGGGCTACAAGCTTTCTCAATGCAGCCTCCACTGGCATAGGGAAAATAAGTGGGGAGATTAGCCAAGCCTGGCAGACTGCTAGAGATGGGGTCGGATCCAGCACCTCGAATTTCGGCGGAAATAAACAGGAGGAATGCCCCCAATGCCATGCGAGATTTTCTTCTTTGACGACTTTGGTAGAACACGTTGAAAAAGTGCACGAAAAGAGTAGAAAGGTTGTCGATGTCTGTCCAAAGTGTAGTCGGGGATTTCGGGATCCAGTTGCGCTCGTACAACACGTCGAAAGAGATCACGGCGGAACTTCAAATGCTTAG 1665 47.99 MAERGGFGRGFGGRGGRGGDRGRGGRRRTAGRRDEEEKWVPVTKLGRLVKDGKIQSMEQIYLHSLPVKEHQIVDLLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLQTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTAKALVLRNQSCNFLCFFLYFGSINLFLFLFFSVSLLLLASLFCVNSLAFEVEFVFCLEHRSYIKHNCPKADKKDVTVVICPLCANGVRLIPDEDPNITWDRHVNSECDPSNYEKATKKKKCPVPGCREILTFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKKPEASFPFIGLLSRSLKEDPKPNRGPKSSSSPKWATSFLNAASTGIGKISGEISQAWQTARDGVGSSTSNFGGNKQEECPQCHARFSSLTTLVEHVEKVHEKSRKVVDVCPKCSRGFRDPVALVQHVERDHGGTSNA 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 50894041 50898377 - Bma020403.2 Bma04g01490 81859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01490 554 SUPERFAMILY Ribosomal protein S5 domain 2-like 157 237 IPR020568 -
Bma04g01490 554 PANTHER RIBOSOMAL S SUBUNIT 2 264 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bma04g01490 554 ProSitePatterns Zinc finger C2H2 type domain signature. 496 517 IPR013087 -
Bma04g01490 554 Gene3D - 357 423 IPR035896 -
Bma04g01490 554 SUPERFAMILY dsRNA-binding domain-like 77 146 - -
Bma04g01490 554 Pfam Ribosomal protein S5, C-terminal domain 165 237 IPR005324 GO:0003735|GO:0005840|GO:0006412
Bma04g01490 554 Pfam AN1-like Zinc finger 377 417 IPR000058 GO:0008270
Bma04g01490 554 ProSiteProfiles S5 double stranded RNA-binding domain profile. 81 144 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bma04g01490 554 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 2 264 - -
Bma04g01490 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 494 522 IPR013087 -
Bma04g01490 554 SMART c2h2final6 525 548 IPR013087 -
Bma04g01490 554 SMART c2h2final6 375 405 IPR013087 -
Bma04g01490 554 SMART c2h2final6 494 517 IPR013087 -
Bma04g01490 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 525 553 IPR013087 -
Bma04g01490 554 TIGRFAM uS5_euk_arch: ribosomal protein uS5 34 241 IPR005711 GO:0003735|GO:0006412|GO:0015935
Bma04g01490 554 SUPERFAMILY AN1-like Zinc finger 369 421 IPR035896 -
Bma04g01490 554 MobiDBLite consensus disorder prediction 1 36 - -
Bma04g01490 554 Gene3D - 38 143 - -
Bma04g01490 554 Pfam Ribosomal protein S5, N-terminal domain 81 145 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bma04g01490 554 ProSiteProfiles Zinc finger AN1-type profile. 371 421 IPR000058 GO:0008270
Bma04g01490 554 Gene3D - 144 237 IPR014721 -
Bma04g01490 554 Gene3D Classic Zinc Finger 471 553 - -
Bma04g01490 554 ProSitePatterns Zinc finger C2H2 type domain signature. 527 548 IPR013087 -
Bma04g01490 554 MobiDBLite consensus disorder prediction 432 451 - -
Bma04g01490 554 MobiDBLite consensus disorder prediction 19 36 - -
Bma04g01490 554 ProSitePatterns Ribosomal protein S5 signature. 98 130 IPR018192 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma14g01009 Bma-Chr14:11734038 Bma04g01490 Bma-Chr4:50894041 7.24E-16 transposed
Bma10g00206 Bma-Chr10:1862507 Bma04g01490 Bma-Chr4:50894041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57251 PF03719 Ribosomal_S5_C 2.30E-23 CL0329 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01490 K02981 - csv:101210000 459.144