Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01494 | ATGGTTGGTATGGGTCAAAAGGATGCTTATGTTGGTGACGAGGCTCAATCCAAGAGAGGTATTTTGACATTAAAATATCCAATCGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAAATTTGGCACCACACATTCTATAATGAGCTTCGCGTGGCTCCGGAAGAGCATCCAGTTCTCCTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAAAAGATGACACAAATTATGTTTGAGACTTTCAATACTCCGGCAATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCATACAGTTCCAATATATGAAGGATATGCCCTTCCACATGCCATCCTTCGTTTGGATCTTGCAGGCAGAGATCTCACAGACGCCCTAATGAAAATTTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAACGTGAAATTGTAAGAGACGTGAAAGAGAAATTAGCTTACATTGCCCTCGACTATGAGCAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTGGAGAAGAGCTACGAGCTACCAGATGGACAAGTGATCACAATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCAATGATCGGAATGGAAGCTGCTGGAATACACGAAACAACGTACAACTCTATCATGAAGTGTGATGTTGACATTAGGAAGGATCTTTATGGCAACATCGTGCTCAGTGGCGGTTCCACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAGATTACAGCCTTAGCTCCCAGTAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCTCTAAGCACTTTCCAACAGGTACATAATCTTAATCAATCAGACAACAGTTGCATCATGTTTTTGTCACAAATTTGGTCACTTTTTACATAA | 1005 | 43.48 | MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNLNQSDNSCIMFLSQIWSLFT | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 50945111 | 50946337 | - | Bma020408.1 | Bma04g01494 | 81863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01494 | 334 | Gene3D | - | 95 | 295 | - | - | |
Bma04g01494 | 334 | PRINTS | Actin signature | 97 | 116 | IPR004000 | - | |
Bma04g01494 | 334 | PRINTS | Actin signature | 6 | 17 | IPR004000 | - | |
Bma04g01494 | 334 | PRINTS | Actin signature | 18 | 40 | IPR004000 | - | |
Bma04g01494 | 334 | PRINTS | Actin signature | 72 | 85 | IPR004000 | - | |
Bma04g01494 | 334 | PRINTS | Actin signature | 193 | 209 | IPR004000 | - | |
Bma04g01494 | 334 | Gene3D | Actin; Chain A, domain 4 | 137 | 228 | - | - | |
Bma04g01494 | 334 | SUPERFAMILY | Actin-like ATPase domain | 1 | 110 | IPR043129 | - | |
Bma04g01494 | 334 | PANTHER | ACTIN-4 | 1 | 315 | - | - | |
Bma04g01494 | 334 | ProSitePatterns | Actins and actin-related proteins signature. | 61 | 73 | IPR020902 | - | |
Bma04g01494 | 334 | SMART | actin_3 | 1 | 323 | IPR004000 | - | |
Bma04g01494 | 334 | Gene3D | - | 2 | 313 | - | - | |
Bma04g01494 | 334 | SUPERFAMILY | Actin-like ATPase domain | 104 | 312 | IPR043129 | - | |
Bma04g01494 | 334 | ProSitePatterns | Actins signature 1. | 10 | 20 | IPR004001 | - | |
Bma04g01494 | 334 | PANTHER | ACTIN | 1 | 315 | IPR004000 | - | |
Bma04g01494 | 334 | CDD | NBD_sugar-kinase_HSP70_actin | 31 | 138 | - | - | |
Bma04g01494 | 334 | Pfam | Actin | 7 | 312 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00129 | Bma-Chr3:989516 | Bma04g01494 | Bma-Chr4:50945111 | 0 | dispersed | |
Bma04g01494 | Bma-Chr4:50945111 | Bma11g00120 | Bma-Chr11:1143658 | 0 | dispersed | |
Bma04g01494 | Bma-Chr4:50945111 | Bma04g01498 | Bma-Chr4:51007317 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01494 | K10355 | - | psom:113309355 | 612.068 |