Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01494 ATGGTTGGTATGGGTCAAAAGGATGCTTATGTTGGTGACGAGGCTCAATCCAAGAGAGGTATTTTGACATTAAAATATCCAATCGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAAATTTGGCACCACACATTCTATAATGAGCTTCGCGTGGCTCCGGAAGAGCATCCAGTTCTCCTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAAAAGATGACACAAATTATGTTTGAGACTTTCAATACTCCGGCAATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCATACAGTTCCAATATATGAAGGATATGCCCTTCCACATGCCATCCTTCGTTTGGATCTTGCAGGCAGAGATCTCACAGACGCCCTAATGAAAATTTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAACGTGAAATTGTAAGAGACGTGAAAGAGAAATTAGCTTACATTGCCCTCGACTATGAGCAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTGGAGAAGAGCTACGAGCTACCAGATGGACAAGTGATCACAATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCAATGATCGGAATGGAAGCTGCTGGAATACACGAAACAACGTACAACTCTATCATGAAGTGTGATGTTGACATTAGGAAGGATCTTTATGGCAACATCGTGCTCAGTGGCGGTTCCACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAGATTACAGCCTTAGCTCCCAGTAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCTCTAAGCACTTTCCAACAGGTACATAATCTTAATCAATCAGACAACAGTTGCATCATGTTTTTGTCACAAATTTGGTCACTTTTTACATAA 1005 43.48 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNLNQSDNSCIMFLSQIWSLFT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 50945111 50946337 - Bma020408.1 Bma04g01494 81863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01494 334 Gene3D - 95 295 - -
Bma04g01494 334 PRINTS Actin signature 97 116 IPR004000 -
Bma04g01494 334 PRINTS Actin signature 6 17 IPR004000 -
Bma04g01494 334 PRINTS Actin signature 18 40 IPR004000 -
Bma04g01494 334 PRINTS Actin signature 72 85 IPR004000 -
Bma04g01494 334 PRINTS Actin signature 193 209 IPR004000 -
Bma04g01494 334 Gene3D Actin; Chain A, domain 4 137 228 - -
Bma04g01494 334 SUPERFAMILY Actin-like ATPase domain 1 110 IPR043129 -
Bma04g01494 334 PANTHER ACTIN-4 1 315 - -
Bma04g01494 334 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Bma04g01494 334 SMART actin_3 1 323 IPR004000 -
Bma04g01494 334 Gene3D - 2 313 - -
Bma04g01494 334 SUPERFAMILY Actin-like ATPase domain 104 312 IPR043129 -
Bma04g01494 334 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Bma04g01494 334 PANTHER ACTIN 1 315 IPR004000 -
Bma04g01494 334 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Bma04g01494 334 Pfam Actin 7 312 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00129 Bma-Chr3:989516 Bma04g01494 Bma-Chr4:50945111 0 dispersed
Bma04g01494 Bma-Chr4:50945111 Bma11g00120 Bma-Chr11:1143658 0 dispersed
Bma04g01494 Bma-Chr4:50945111 Bma04g01498 Bma-Chr4:51007317 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01494 K10355 - psom:113309355 612.068