Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01498 CAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTTCCTAGCATTGTAGGACGTCCTCGTCATACTGGTGTAATGGTTGGTATGGGTCAAAAGGATGCTTATGTTGGTGACGAGGCTCAATCCAAGAGAGGTATTTTGACATTAAAATATCCAATCGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAAATTTGGCACCACACATTCTATAATGAGCTTCGCGTGGCTCCGGAAGAGCATCCAGTTCTCCTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAAAAGATGACACAAATTATGTTTGAGACTTTCAATACTCCGGCAATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCATACAGTTCCAATATATGAAGGATATGCCCTTCCACATGCCATCCTTCGTTTGGATCTTGCAGGCAGAGATCTCACAGACGCCCTAATGAAAATTTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAACGTGAAATTGTAAGAGACGTGAAAGAGAAATTAGCTTACATTGCCCTCGACTATGAGCAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTGGAGAAGAGCTACGAGCTACCAGATGGACAAGTGATCACAATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCGATGATCGGAATGGAAGCTGCTGGAATACACGAAACAACGTACAACTCTATCATGAAGTGTGATGTTGACATTAGGAAGGATCTTTATGGCAACATCGTGCTCAGTGGCGGTTCCACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAGATTACAGCATTAGCTCCCAGTAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGGAAATACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCTCTCAGCACTTTCCAACAGGTACATAATCTTAATCAATCAGACAACAGTTGCATCATGTTTTTGTCACAAATTTGGTCACTTTTTACATAA 1083 43.95 QAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNLNQSDNSCIMFLSQIWSLFT 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51007317 51008619 + Bma020413.1 Bma04g01498 81867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01498 360 Gene3D - 121 321 - -
Bma04g01498 360 SUPERFAMILY Actin-like ATPase domain 130 338 IPR043129 -
Bma04g01498 360 CDD NBD_sugar-kinase_HSP70_actin 57 164 - -
Bma04g01498 360 PANTHER ACTIN 1 341 IPR004000 -
Bma04g01498 360 Gene3D - 2 339 - -
Bma04g01498 360 SUPERFAMILY Actin-like ATPase domain 2 136 IPR043129 -
Bma04g01498 360 PANTHER ACTIN-4 1 341 - -
Bma04g01498 360 Pfam Actin 2 338 IPR004000 -
Bma04g01498 360 ProSitePatterns Actins and actin-related proteins signature. 87 99 IPR020902 -
Bma04g01498 360 PRINTS Actin signature 219 235 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 9 18 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 44 66 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 123 142 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 32 43 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 98 111 IPR004000 -
Bma04g01498 360 Gene3D Actin; Chain A, domain 4 163 254 - -
Bma04g01498 360 SMART actin_3 2 349 IPR004000 -
Bma04g01498 360 ProSitePatterns Actins signature 1. 36 46 IPR004001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01498 K10355 ACTF; actin, other eukaryote - psom:113310417 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01498 Bma-Chr4:51007317 Bma11g00120 Bma-Chr11:1143658 0 dispersed
Bma04g01494 Bma-Chr4:50945111 Bma04g01498 Bma-Chr4:51007317 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.0e-215 743.8
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.6e-214 739.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.7e-213 738.4
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.2e-213 738.0
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT2G37620 96.2 2.2e-189 658.3
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT2G37620 96.2 7.7e-174 606.7
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT2G37620 95.5 1.4e-172 602.4
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT2G37620 89.4 1.2e-105 380.2
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.3e-213 738.8
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 8.4e-213 736.1
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.1e-211 731.5
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.3e-210 728.0
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT5G59370 96.2 9.3e-188 652.9
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT5G59370 96.2 3.2e-172 601.3
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT5G59370 95.5 5.5e-172 600.5
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT5G59370 89.4 2.9e-104 375.6
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 3.8e-213 737.3
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 3.8e-213 737.3
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 9.3e-212 732.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.0e-210 729.2
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G46520 96.4 4.2e-188 654.1
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G46520 96.5 1.4e-172 602.4
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G46520 95.8 2.5e-172 601.7
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G46520 89.8 1.3e-104 376.7
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.4e-215 745.3
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 5.3e-215 743.4
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.9e-213 737.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 6.4e-213 736.5
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G12110 96.7 7.6e-190 659.8
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G12110 96.8 2.6e-174 608.2
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G12110 96.8 3.4e-174 607.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G12110 89.4 9.0e-106 380.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 5.6e-209 723.4
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.4e-209 723.0
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.1e-208 721.5
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.2e-208 719.9
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G18780 92.9 5.7e-185 643.7
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G18780 93.3 2.3e-170 595.1
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G18780 92.9 1.1e-169 592.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G18780 86.1 7.1e-103 370.9
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.9e-209 724.9
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.5e-209 724.5
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 7.4e-209 723.0
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.1e-208 721.5
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT1G49240 92.9 5.7e-185 643.7
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT1G49240 93.3 2.3e-170 595.1
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT1G49240 92.9 1.1e-169 592.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT1G49240 86.1 7.1e-103 370.9
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.5e-217 751.1
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 5.6e-217 750.0
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 3.4e-214 740.7
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.8e-213 737.3
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT5G09810 96.4 2.9e-189 657.9
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT5G09810 96.5 1.0e-173 606.3
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT5G09810 96.2 3.8e-173 604.4
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT5G09810 89.4 3.4e-105 378.6
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 78.6 9.2e-58 219.5
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 3.5e-57 217.6
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.6e-54 208.8
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.6e-54 208.8
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.9e-56 214.2
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.9e-56 214.2
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 77.9 3.9e-56 214.2
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 6.6e-56 213.4
Bma01g00212 BCT,CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.0e-37 151.8
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29340 79.9 4.1e-61 230.7
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT4G29340 79.9 4.1e-61 230.7
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 74.6 3.6e-57 217.6
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 74.6 6.8e-56 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01498 Bma_Chr04 FPKM 18.802788 21.538857 18.412939 18.570616 18.088528 13.899945 17.213438 16.065371 17.437422 17.384806