Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01498 CAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTTCCTAGCATTGTAGGACGTCCTCGTCATACTGGTGTAATGGTTGGTATGGGTCAAAAGGATGCTTATGTTGGTGACGAGGCTCAATCCAAGAGAGGTATTTTGACATTAAAATATCCAATCGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAAATTTGGCACCACACATTCTATAATGAGCTTCGCGTGGCTCCGGAAGAGCATCCAGTTCTCCTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAAAAGATGACACAAATTATGTTTGAGACTTTCAATACTCCGGCAATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCATACAGTTCCAATATATGAAGGATATGCCCTTCCACATGCCATCCTTCGTTTGGATCTTGCAGGCAGAGATCTCACAGACGCCCTAATGAAAATTTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAACGTGAAATTGTAAGAGACGTGAAAGAGAAATTAGCTTACATTGCCCTCGACTATGAGCAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTGGAGAAGAGCTACGAGCTACCAGATGGACAAGTGATCACAATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCGATGATCGGAATGGAAGCTGCTGGAATACACGAAACAACGTACAACTCTATCATGAAGTGTGATGTTGACATTAGGAAGGATCTTTATGGCAACATCGTGCTCAGTGGCGGTTCCACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAGATTACAGCATTAGCTCCCAGTAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGGAAATACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCTCTCAGCACTTTCCAACAGGTACATAATCTTAATCAATCAGACAACAGTTGCATCATGTTTTTGTCACAAATTTGGTCACTTTTTACATAA 1083 43.95 QAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNLNQSDNSCIMFLSQIWSLFT 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51007317 51008619 + Bma020413.1 Bma04g01498 81867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01498 360 Gene3D - 121 321 - -
Bma04g01498 360 SUPERFAMILY Actin-like ATPase domain 130 338 IPR043129 -
Bma04g01498 360 CDD NBD_sugar-kinase_HSP70_actin 57 164 - -
Bma04g01498 360 PANTHER ACTIN 1 341 IPR004000 -
Bma04g01498 360 Gene3D - 2 339 - -
Bma04g01498 360 SUPERFAMILY Actin-like ATPase domain 2 136 IPR043129 -
Bma04g01498 360 PANTHER ACTIN-4 1 341 - -
Bma04g01498 360 Pfam Actin 2 338 IPR004000 -
Bma04g01498 360 ProSitePatterns Actins and actin-related proteins signature. 87 99 IPR020902 -
Bma04g01498 360 PRINTS Actin signature 219 235 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 9 18 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 44 66 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 123 142 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 32 43 IPR004000 -
Bma04g01498 360 PRINTS Actin signature 98 111 IPR004000 -
Bma04g01498 360 Gene3D Actin; Chain A, domain 4 163 254 - -
Bma04g01498 360 SMART actin_3 2 349 IPR004000 -
Bma04g01498 360 ProSitePatterns Actins signature 1. 36 46 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01498 Bma-Chr4:51007317 Bma11g00120 Bma-Chr11:1143658 0 dispersed
Bma04g01494 Bma-Chr4:50945111 Bma04g01498 Bma-Chr4:51007317 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01498 K10355 - psom:113310417 663.685