Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01517 ATGAATAGCTTGACTGTTAATACTGAAGATTCTTTTGTGAGTTTGCTTGAACTTGCTGCTAATGACGATATTGAGGGGTTCAAAAGATTAATTGAACTTGATCCTTCTGGCATTGATGAGGTTGGTCTATGGTATTGCCGTAAGAAAGGCTCGAAGCAGATGGTTAATGAGCATCGAACTCCATTAATGGTGGCTGCTACGTATGGTAGCCTCGAAGTTATGAAGCTGATTTTGTCATTGTCTGATGCTAATGGTTCTTCTGGTTCGATGGGAACGTTGAATTCTAATTCGCCTCCCCTTATGTCGTCCCCTAAAAAGATCTATTCGGCTTTGGATTTTCCATATTCACAAGCAAATTCCAAATTCAACGATCTTCATGTCTCTTCTTCATCGGAGAAGAAAGAGTACCCTATCGATCCATCTCTCCCAGACATCAAGAACAGCATATACTCGACCGATGAATTTCGGATGTATTCGTTTAAGGTGCGGCCTTGTTCTCGTGCCTATTCGCATGATTGGACGGAGTGCCCTTTCGTCCATCCGGGAGAAAATGCTCGAAGAAGGGATCCAAGGAAGTACCATTACAGCTGTGTTCCTTGTCCCGATTTCAGAAAAGGGGCTTGTAGGCGTGGAGATTTGTGTGAATATGCCCATGGAGTTTTCGAGTGTTGGCTCCACCCGGCTCAGTATAGAACACGACTCTGCAAAGATGGTACAAGTTGTGCTAGAAGAGTTTGCTTCTTTGCCCACACTGATGAGGAGCTCCGACCTTTATATGTATCGACTGGCTCTGCCGTTCCTTCTCCTCGGGCCGGTTCGTCTGGGGCTTCTGTACTGGATTATGCCTCGGCCATGAATATCTTGCCTGGTTCTCCGTCGGCGATGTCTGTTATGTCTCCCACGCCCTTCACTCCTCCGATGTCTCCCTCAGGGGCCCACTCTTCTATGGCTTGGCCTCAGCCAAATGTTCCCGCATTGCATCTTCCCGGAAGCAATTTTCAGTCAAGTCGGCTGAGATCGTCCGTAAATGCTAGAGATATTTTGACAGAGGATTTTGATTTACTTCCGGACTTTGATATTCAGCAACAACAACTTCTAAATGATCTATCTTGTCTCTCTCAGCAGAATATGGGTTCTAATTCTTTGAACCGTTCTGGTCGGATGAAAGCCTTAACCCCGTCGAATCTTGACGATCTGTTTTCTTCTGAGAGTTTGTCTCCTAGGTACACTGATCAGGCATTGGCTTCGGCTGTTTTCTCCCCCACTCATAAGTCAGCTGTTCTTAGCCAATTTCAGCAGCAGCAGAGTATGCTGTCTCCTATCAACACCAACTTCTCCCCTAAAAATGTGGATCACCCTCTTTTACAGGCATCATTTGGGGTACCATCTGGAAGAATGTCTCCGAGAAATGTGGAACCCATCTCACCGATCAGCTCCCGTCTGTCGATGTTGGCTCAGCGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGCCCTGACTGGGCTGTTTCGGCTGATGAATATGGTAAGATCCGCCGATCTTCTTCTTTTGAGCTAGGAAATAATGGGGAAGAGCCGGATTTATCATGGGTTCAATCTCTTGTCAAAGAATCGCCTACTGATATGAAGGAAAATCAGACAATTCCATTTTCTGGGAATGCAAACAATGGCAAGACAGCTAATGTAAGCTCTCAGATGGAATCGACCGATCACGCCGTTTTGGGGGCATGGCTAGAACAAATGCAGCTCGATAATCTGGTAGCCCAGCAAAATTGA 1779 46.26 MNSLTVNTEDSFVSLLELAANDDIEGFKRLIELDPSGIDEVGLWYCRKKGSKQMVNEHRTPLMVAATYGSLEVMKLILSLSDANGSSGSMGTLNSNSPPLMSSPKKIYSALDFPYSQANSKFNDLHVSSSSEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTDEELRPLYVSTGSAVPSPRAGSSGASVLDYASAMNILPGSPSAMSVMSPTPFTPPMSPSGAHSSMAWPQPNVPALHLPGSNFQSSRLRSSVNARDILTEDFDLLPDFDIQQQQLLNDLSCLSQQNMGSNSLNRSGRMKALTPSNLDDLFSSESLSPRYTDQALASAVFSPTHKSAVLSQFQQQQSMLSPINTNFSPKNVDHPLLQASFGVPSGRMSPRNVEPISPISSRLSMLAQREKQQQFRSLSSRPDWAVSADEYGKIRRSSSFELGNNGEEPDLSWVQSLVKESPTDMKENQTIPFSGNANNGKTANVSSQMESTDHAVLGAWLEQMQLDNLVAQQN 592
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 51197814 51199894 - Bma020437.1 Bma04g01517 81886
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01517 592 MobiDBLite consensus disorder prediction 541 566 - -
Bma04g01517 592 ProSiteProfiles Zinc finger C3H1-type profile. 199 221 IPR000571 GO:0046872
Bma04g01517 592 PANTHER UNKEMPT FAMILY MEMBER 102 499 IPR045234 -
Bma04g01517 592 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 102 499 - -
Bma04g01517 592 Gene3D - 195 257 - -
Bma04g01517 592 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 84 - -
Bma04g01517 592 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 494 589 - -
Bma04g01517 592 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 219 IPR000571 GO:0046872
Bma04g01517 592 PANTHER UNKEMPT FAMILY MEMBER 1 84 IPR045234 -
Bma04g01517 592 PANTHER UNKEMPT FAMILY MEMBER 494 589 IPR045234 -
Bma04g01517 592 SMART c3hfinal6 194 220 IPR000571 GO:0046872
Bma04g01517 592 SMART c3hfinal6 229 252 IPR000571 GO:0046872
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bma01g02062 Bma04g01517 CCT
Bma01g02062 Bma04g01517 ECH
Bma04g01517 Bma10g00204 BCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01517 Bma-Chr4:51197814 Bma13g00133 Bma-Chr13:1338580 5.49E-24 dispersed
Bma11g00553 Bma-Chr11:7572913 Bma04g01517 Bma-Chr4:51197814 1.40E-52 dispersed
Bma11g00559 Bma-Chr11:7612067 Bma04g01517 Bma-Chr4:51197814 3.34E-56 dispersed
Bma01g02725 Bma-Chr1:84626372 Bma04g01517 Bma-Chr4:51197814 0 transposed
Bma10g00204 Bma-Chr10:1811749 Bma04g01517 Bma-Chr4:51197814 7.36E-51 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57255 PF00642 zf-CCCH 1.10E-05 CL0537 Bma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01517 - - qsu:112025717 876.7