Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01535 ATGGATCCGGCGAAAACGCCCCTTGGCAAGATGCTGCTGGAAGGAATCACTCCGGTTGTCATGGTCCTCCACACTTCGCTCGTCGAAGAGGCTTGCCTCAAGAACGGTCTCACATTTGTCCAGATGCTCAGCCCCTTTTGCTCATTCAGCAACATTGACGTGCCTGTTCGGACGGCCAGTGATCAACCTTATAGGATTCAAAAGTTCAAGCTACGGTTACTTCACGCACCAGACATTCGGAAGCCAAACTGGGAGGTGTCAAAAGAGCGACTTAAAGATGTTATTACACAAGCTGGCGAGAAGGTTTTTTCTGAATTGGGATCAGATCCACCCCAAATTGATAATGTGCTTGGGAGATCTGAATCTGAAGTTCTTCCACCTTGGTTTCAAATATTTAACGAGGAGCTTCTATGTGCTGCGTCATTTTCAGAGCACGAAGCTTTTGACCATCCTGTGGCATGCCTTTTGGCGGTCTCTTCTAATGATGAATATCCCATTAACAGATTTGTTGATTTCTTTAACTCTGACAAGCTACCTTCTCTTTTCAATGATGGTTCTATGGACACAAAGATCTTAAAGCATTACTTATTAGTGCACGATAATCAAGATGGCAATTCAGAGAAGGCGGTCAAATTATTATCTGAAATGAGGAGTACATTTGGCTCTAATGACTGTCAATTACTATGTATCAATTCATCTCAAGATGGATCAGTTGAATATCAAGATAGTCCTTGGGATTCTCTTATATCTGAGGTATCAACAAATCATCGTACTGGTTGCTTAATTAACAATGACGATTTGAATGAGATAAAAGATTTAATGCAAGATTTATCATCCCAACGAATCATCCCCTACATGGAAGAAAAAATACGTTTATTAAATCAGCAGGTTTCGGCTACAAGGAAAGGTTTTAGAAACCAGATTAAGAACTTATGGTGGAGAAAAGGAAAAGAAGACACTGTAGAGTCGCCTATTGGTCCCATATATACATTTAGCTCCATCGAGTCTCAGATAAGGGTTTTGGGTGACTATGCTTTCATGTTACGAGATTATGAACTTGCATTGACAAATTACCGCTTGATTTCAACTGACTACAAGCTTGATAAAGCCTGGAAACGATATGCAGGAGTGCAGGAGATGATGGGACTTGCGTATTTCATGCTGGATCAGTCAAGAAAGGAAGCAGAATACTGCATGGAAAATGCATTTACCACTTATTTGTGCATTGAGGTGGGATACTTGAATATGGTGAGATGTCCTATCTTTTCGGAAAAAAAAATCTCTGGAAGGTTTACCGTTGAAATGTTGCTCAACATCTTTATATCAAAATTCATGCAGAAAATTGGATCATCTGCCCAGCAGAATGCAACACGTTGTGGCATTTGGTGGGCGGAGATGTTGAAGACAAGGGACCAATACAAAGAAGCTGCTGCTGTCTACTCTCGTATTTGTGGTGAGGAGATTTTACATTCAGCAGTGATGCTTGAGCAAGCATCTTTCTGCTACTTACTGTCCAGGCCTCCACTGTTGAGGAAATATGGATTTCATCTTGTTCTTTCTGGGGATCGTTACAAGAGATCTGATCAGATTAAGCATGCAATCCGTACATATAGAAATGCTCTTTCAATTTTTAAGGAAACTATGTGGAGCCACATCAAAGACCATGTTTGTTTCCACATTGGGCAGTGGTATGCTTTTCTTGGGATGTACGATGTTGCAGTCTCACAAATGTTGGAAGTTCTTGCCTGTAGTCATCAGTCAATGGCGACACAGGAATTGTTTTTGAAGGACTTTCTTCAAACCGTTCAGAAAACAGGAAGGACATTCGAGGTTTTGAAACTTCAGTTACCCGAGATAAACTTCTCGTCACTTAAGATTGCCTTTGAAGATCATCGAACTTATGCATCGCCTGCAGCTGCTGGTGTTAAAGAAAGTTTGTGGCGATCTTTGGAGGAAGACATGATTCCATCGTTATCCTCTGCAAAGTCTAATTGGTTGGAGTTGCAATCAAAGATTGTTTCAAAAACAGACAAAGAATCAAATATTTGTGTCGCCGGAGAATTAGTGAAGGTGGATATTGAATTAAAAAACCCTCTGCAAATCCCCATTTCTATCTCTGGTGTTTCTCTCATATGTGATCTTTCCACGGAATCCACTGAAACTAGCTTAGGTAATTTATTATATGATAATTTCGTTGATGATGGTGTAGATGCACAAAATATAGCTGTTGAGCTTCAGAATGATGGTGAACTGGAGAAGTTGATTAGTAGGGATAATAGATTGGACAAATCATTCACTTTGTCTGAGGTTGACTTTTCATTAGGAGGAGGTGAAACAAATATTTTTCTTAACAGCTCCGGTGCAGTTGCTGGCTGTGCTACTAGTGAATTTATAGGAATAGTTTTCTTCTCTATGTATCTAGTGGCAGTTGACTCCTTATTTCTCCAGGTGCAACTGTCTGTCACTCCTAATGTAGAAGGCATTCTACAAATCCTCGGTGTAAGGTGGAGGTTGTCAAGTTCTGTAGTTGGTTTTCACAAATTTGAGTCTGATATTGGAAAGAAGAAAACTTTAAATGGAAGACAGAAATCCAAGCATTCTCCTATTAATAACCTTAAGTTCATAGTGATCCAGAGCCTTCCTAAGCTTGAGGGCTTCATTCAACAGCTGCCTACAATAGTATATGCTGGAGATCTCCGGCCTCTTGTTCTGGAATTGAGGAATCAATCTGAATACTCCGTGAAGAATTTAAAAATAAAGATTAGTCACCCAAGATTCTTTAGCATTGGTAAGCAAGAGAAATCAAACATAGAGTTTCCTGCGTGCTTGGAGAAGACAATGACATCTGAAGAGGGAAGTACATATGACGCTCCTAGTATGTCTAATGAGACTTTTTTCTTTCCTGAGGATACTTCAATCCAAAAAGGGAAGCCATTTTTGTGGCCTCTTTGGTTTCGGGCAGCTGTCACTGGAAATATATCCTTGCGTATTACTATATATTATGAGATGAAAGACATATCAAGCATCATGAGATATCGCACTTTACGCATGCAGTATAGTCTTCAGGTGCTTCCTTCGCTGGATGTTTCCTTCCAAATCAATCCTTGTTCATCCAGGTTGCAAGAATTTCTTGTGCGCATGGATGTCATTAATAGGACCAGCGCTGAGGTTTACCAGGTTCACCAACTATCATCGGTTGGAAAGCAGTGGGAACTCTCTTTGCTTCAACCTGTTGCTACCATATTTCCTTCGCGAGCTCTGATTGCTGGTCAAGCCCTTTCAGTCTTTTTCGTGCTTAAGGATATTAAAAACTTGGTAGGTTCTGAAGATAGGACGTCTTCTCTCTTGCCATTGTCTGGAAGTGATCTTAGCTTGTGTCCTCGTGATAGTGGCATAAAGCTTTTTGATACATCCTTTTCACCTTTGGCTGATTTCCACCATTCTGAAAGATTACTACAGGAAAGAACACATGGGGACTCAAATACAGTAGACTTCATATTAATATCTCAATCCCACAAGGAAGGTGTTCAAACTGGAATACAAGATCCGCCTCGACTATTTTGTAATTACATATGTCATTGCAGTACTTCAAGTTCCAGTCCTATCTTATGGCTAGTCGACGGGCCTAGAACAGTATATCATATTCCTAAAATATTCTCCAAAATGAACGATTTGTTCTCTTCCCGGTCTTTCTCCAGCAATCGCGCCGGCGTCGAGATGACCAATTCGAATTCAGAAAGCGCCGTCAACCTCGACAAGTTCTTCGAGGACGTCGAGTCCGTGAAGGACGAGCTGAAGGAGCTCGAGGATTTGTATTCCCGATTGAAACGCTCTCATGAGCAGAGCAAGACTCTCCACAACGCTAAGGCCGTGAAGGAGCTCCGTTCACTGATGGATTCCGACGTATCGCTTGCTCTCAAGAAAGCGAAGCTCATTAAGGTCCGATTGGAAGCTCTAGACAGGGCTAATGCTGCTAATCGGAGCTTGCCTGGTTGCGGACCTGGATCTTCATCGGACCGGACCAGAACGTCTGTGGTCAACGGACTGAGGAAGAAGCTACAGGACGCTATGGAGAGCTTCAACAATCTGAGACAGCAGATCTCGTCTGAGTACAGAGAGACCGTAGAACGGAGGTACTTCACCGTGACCGGTGAAAATCCCGACGAGAAAACCCTTGACCGGTTGATCTCTACAGGCGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGCAGAGTTTTGGACACCATTAATGAGATTCAAGAGAGGCATGATGCAGTTAAAGACATGGAGAAGAACCTCAAGGAACTCCACCAAGTTTTCATGGATATGGCTGTGTTGGTGCAGGCTCAAGGAGAGCAACTCGACGACATCGAGAGCCAGGTGGGGAGGGCTCATTCGTTCGTCAGAGGCGGAGCACAGGAGTTGCAGACAGCAAGGGTGTACCAGAAAAATACTCGGAAATGGGTAATTATTTCTACCATTGTTTTGCTTATTATCATCATTGTGATTGTTCTGATAATCGTAAAGCCTGGAAGTAATAGTGGGAGTAGTCAAAATAGTGGGAGTACAACACCACCAGCTTAG 4599 42.14 MDPAKTPLGKMLLEGITPVVMVLHTSLVEEACLKNGLTFVQMLSPFCSFSNIDVPVRTASDQPYRIQKFKLRLLHAPDIRKPNWEVSKERLKDVITQAGEKVFSELGSDPPQIDNVLGRSESEVLPPWFQIFNEELLCAASFSEHEAFDHPVACLLAVSSNDEYPINRFVDFFNSDKLPSLFNDGSMDTKILKHYLLVHDNQDGNSEKAVKLLSEMRSTFGSNDCQLLCINSSQDGSVEYQDSPWDSLISEVSTNHRTGCLINNDDLNEIKDLMQDLSSQRIIPYMEEKIRLLNQQVSATRKGFRNQIKNLWWRKGKEDTVESPIGPIYTFSSIESQIRVLGDYAFMLRDYELALTNYRLISTDYKLDKAWKRYAGVQEMMGLAYFMLDQSRKEAEYCMENAFTTYLCIEVGYLNMVRCPIFSEKKISGRFTVEMLLNIFISKFMQKIGSSAQQNATRCGIWWAEMLKTRDQYKEAAAVYSRICGEEILHSAVMLEQASFCYLLSRPPLLRKYGFHLVLSGDRYKRSDQIKHAIRTYRNALSIFKETMWSHIKDHVCFHIGQWYAFLGMYDVAVSQMLEVLACSHQSMATQELFLKDFLQTVQKTGRTFEVLKLQLPEINFSSLKIAFEDHRTYASPAAAGVKESLWRSLEEDMIPSLSSAKSNWLELQSKIVSKTDKESNICVAGELVKVDIELKNPLQIPISISGVSLICDLSTESTETSLGNLLYDNFVDDGVDAQNIAVELQNDGELEKLISRDNRLDKSFTLSEVDFSLGGGETNIFLNSSGAVAGCATSEFIGIVFFSMYLVAVDSLFLQVQLSVTPNVEGILQILGVRWRLSSSVVGFHKFESDIGKKKTLNGRQKSKHSPINNLKFIVIQSLPKLEGFIQQLPTIVYAGDLRPLVLELRNQSEYSVKNLKIKISHPRFFSIGKQEKSNIEFPACLEKTMTSEEGSTYDAPSMSNETFFFPEDTSIQKGKPFLWPLWFRAAVTGNISLRITIYYEMKDISSIMRYRTLRMQYSLQVLPSLDVSFQINPCSSRLQEFLVRMDVINRTSAEVYQVHQLSSVGKQWELSLLQPVATIFPSRALIAGQALSVFFVLKDIKNLVGSEDRTSSLLPLSGSDLSLCPRDSGIKLFDTSFSPLADFHHSERLLQERTHGDSNTVDFILISQSHKEGVQTGIQDPPRLFCNYICHCSTSSSSPILWLVDGPRTVYHIPKIFSKMNDLFSSRSFSSNRAGVEMTNSNSESAVNLDKFFEDVESVKDELKELEDLYSRLKRSHEQSKTLHNAKAVKELRSLMDSDVSLALKKAKLIKVRLEALDRANAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDAMESFNNLRQQISSEYRETVERRYFTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFMDMAVLVQAQGEQLDDIESQVGRAHSFVRGGAQELQTARVYQKNTRKWVIISTIVLLIIIIVIVLIIVKPGSNSGSSQNSGSTTPPA 1532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51364686 51395664 - Bma020455.1 Bma04g01535 81904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01535 1532 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 187 556 IPR024420 -
Bma04g01535 1532 Pfam Syntaxin 1253 1456 IPR006011 GO:0016020
Bma04g01535 1532 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1421 1483 IPR000727 -
Bma04g01535 1532 Coils Coil 1421 1441 - -
Bma04g01535 1532 CDD SNARE_syntaxin1-like 1420 1482 - -
Bma04g01535 1532 ProSitePatterns Syntaxin / epimorphin family signature. 1427 1466 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma04g01535 1532 Pfam SNARE domain 1457 1509 IPR000727 -
Bma04g01535 1532 Coils Coil 1251 1285 - -
Bma04g01535 1532 Gene3D Tetratricopeptide repeat domain 334 592 IPR011990 GO:0005515
Bma04g01535 1532 SUPERFAMILY TPR-like 453 589 IPR011990 GO:0005515
Bma04g01535 1532 SMART tSNARE_6 1416 1483 IPR000727 -
Bma04g01535 1532 Gene3D - 1417 1514 - -
Bma04g01535 1532 SUPERFAMILY t-snare proteins 1250 1476 IPR010989 GO:0016020|GO:0016192
Bma04g01535 1532 Gene3D - 1249 1381 - -
Bma04g01535 1532 CDD SynN 1251 1408 IPR006011 GO:0016020
Bma04g01535 1532 PANTHER TRANSPORT PROTEIN TRAPP 8 1214 IPR024420 -
Bma04g01535 1532 SMART SynN_4 1246 1372 IPR006011 GO:0016020
Bma04g01535 1532 Coils Coil 1346 1373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01535 Bma-Chr4:51364686 Bma07g00353 Bma-Chr7:4463222 7.78E-116 dispersed
Bma01g02014 Bma-Chr1:74718270 Bma04g01535 Bma-Chr4:51364686 1.84E-77 wgd
Bma10g00132 Bma-Chr10:1190775 Bma04g01535 Bma-Chr4:51364686 2.70E-164 wgd
Bma04g00526 Bma-Chr4:4618116 Bma04g01535 Bma-Chr4:51364686 5.35E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01535 K20305 - qsu:112032498 1556.19