Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01538 ATGGCCACGTACTTTCAGGTTAATCCAGATATTCAAGCTTCTGATGGATTACAGACGCTCGTACTTATGAATCCCGGCTATGTACAGTTCTCCGATGCCCTTCCACCGCCTCCGACCAACCTTTTATTCCTCAATTCCCTGGCCGGCAATTCTCTAGCTTCTCAGAATCTCCACCACGCGCCGCCATCTCAATCCCCGCACTTCTCCGGCATGCCTTTGCCGGTTTCCCTTTCCCCTACCTCACAGGACCCTAATTCTCATCCGACGCATCCCCACCATATCTCCGCGTTGCATGGATTTATCCCCGGAGCAAAATTCAATCATTGGAATCCGATCAATTCCTCCACGGACGCGCGTGAATCCCAACGCGCTACTCAAGGGCTTTCCCTCAGCCTTTCCTCTCAGCAGCCTGGTTTTGGGCTACTCCGAGCCGAACGAGATCCATCATCTCCATCTCAGCTCGCAGGCGAGGAGATTCGAGTCTCCGGCGGATCATCCTCCATTTCCGGCAACACCAACGGCGGCGTTTCCGGCTTACACGGTGTGTTGCTTTGCTCAAAGTACTTGAAAGCGGCTCAGGAACTTCTCGACGAGGTCGTAAACGTCAGCACCGACGGAATCAAGAACGAGCCCACTAAAAAACCCACCGGGACAAAGATCACCGACGAGTCCTCCGGGACGGCAACCGACGACACGTCCGTCAGAATCGACCCAGCCGGGAAGGACAGTTCAGAGCTCACGACGGCTGAAAGACAGGAAATTCAGATGAAGAAAGCTAAACTTTTAAGCATGCTTGATGAGGTGGAGCAAAGATACAGACAATATCATCATCAGATGCAGATAGTAATATCCTCGTTTGAGCAATCGACCGGAATTGGGTCGGCAAGAACGTACACTTCTCTGGCCCTCGAGACCATTTCGAAGCAATTCCGGTGTTTGAAAGACACGATTACCGGCCAAATCAAGGCGGCAAACAAGAGTTTAGGGGAAGAAGATTGGGAGGGGGGTAAAATTGGAAGTTCAAGGCTGAAATTTGTTGATCATCAGCTTAGACAGCAGAGAGCTCTTCAACAATTGGGAATGATCCAGCAAAATGCTTGGAGACCCCAAAGAGGCCTCCCCGAACGCTCTGTTTCGGTTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCATCCTTATCCAAAGGATTCGGATAAGCAAATGCTGGCCAAGCAAACCGGGCTAACGAGGAGCCAGGTTTCGAATTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCGATGGTGGAAGAAATGTACAATGAGGAAACCAAGGACCAAGAACAGAATGGCTCTGCAGATAATAGGAGCATGATCAATGAAAATTCTCCTCCCAACTCCATTTCTCCAAGGAGAAAAAGCTCCTCCAATCGATCTAAATCCGCCATTAGAGGAAATATTCAAAACTCGTCTGGATCGAGGCTTCCCAGCTTGTCAAAGCTCGAAGATATCTCACATGGATCGAGTCCAAAGAAACAAAAACACTCGGAAATGGCAATGCATTCTTCACTGAATGTAATCTCGTCAATTAACATCGACGGGAAGCAAGCTCCGTCAAACCCGATGAACATTTCAACGAAAGTAGGCAATGAGAAGCAAAGCCGAGACGAATACTCATTCATGATGAACCAAGCTAATTTCGCAGGTGGATTCGGAGAATACCCGATCGAACGAATTGGTCGATACGATGACGACCAATTCACTCCTCGTTTTTCCACCAATGGTGTCTCGCTAACTCTCGGGCTCCCCCACCATAATTTTCTTCCAAGCCAATCGATCCACGTCGGAAGACGGATCCAAATTGGCGAACCAAACGAGTTTTCCGGGATGAATTCCTCAACTCCTCATTCTACCACGGCTTTTGACAACATCGAAATTCAAAATAGAAAGCAATTTGTTGCACAATTGTTGCCGGATTTTGTGGTCTGA 1968 48.78 MATYFQVNPDIQASDGLQTLVLMNPGYVQFSDALPPPPTNLLFLNSLAGNSLASQNLHHAPPSQSPHFSGMPLPVSLSPTSQDPNSHPTHPHHISALHGFIPGAKFNHWNPINSSTDARESQRATQGLSLSLSSQQPGFGLLRAERDPSSPSQLAGEEIRVSGGSSSISGNTNGGVSGLHGVLLCSKYLKAAQELLDEVVNVSTDGIKNEPTKKPTGTKITDESSGTATDDTSVRIDPAGKDSSELTTAERQEIQMKKAKLLSMLDEVEQRYRQYHHQMQIVISSFEQSTGIGSARTYTSLALETISKQFRCLKDTITGQIKAANKSLGEEDWEGGKIGSSRLKFVDHQLRQQRALQQLGMIQQNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYNEETKDQEQNGSADNRSMINENSPPNSISPRRKSSSNRSKSAIRGNIQNSSGSRLPSLSKLEDISHGSSPKKQKHSEMAMHSSLNVISSINIDGKQAPSNPMNISTKVGNEKQSRDEYSFMMNQANFAGGFGEYPIERIGRYDDDQFTPRFSTNGVSLTLGLPHHNFLPSQSIHVGRRIQIGEPNEFSGMNSSTPHSTTAFDNIEIQNRKQFVAQLLPDFVV 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51436269 51438748 - Bma020458.1 Bma04g01538 81907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01538 655 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 620 - -
Bma04g01538 655 MobiDBLite consensus disorder prediction 218 232 - -
Bma04g01538 655 MobiDBLite consensus disorder prediction 111 166 - -
Bma04g01538 655 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Bma04g01538 655 SMART HOX_1 367 431 IPR001356 GO:0003677
Bma04g01538 655 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Bma04g01538 655 MobiDBLite consensus disorder prediction 435 511 - -
Bma04g01538 655 MobiDBLite consensus disorder prediction 444 497 - -
Bma04g01538 655 MobiDBLite consensus disorder prediction 55 89 - -
Bma04g01538 655 Pfam Associated with HOX 182 318 IPR006563 -
Bma04g01538 655 CDD homeodomain 367 428 IPR001356 GO:0003677
Bma04g01538 655 Coils Coil 251 278 - -
Bma04g01538 655 MobiDBLite consensus disorder prediction 55 91 - -
Bma04g01538 655 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 620 - -
Bma04g01538 655 MobiDBLite consensus disorder prediction 111 138 - -
Bma04g01538 655 MobiDBLite consensus disorder prediction 206 248 - -
Bma04g01538 655 Gene3D - 370 448 - -
Bma04g01538 655 SMART prehox3 177 319 IPR006563 -
Bma04g01538 655 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02011 Bma04g01538 CCT
Bma04g01538 Bma04g00527 CCT
Bma04g01538 Bma10g00129 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01538 Bma-Chr4:51436269 Bma14g00602 Bma-Chr14:6539299 3.24E-82 dispersed
Bma01g02011 Bma-Chr1:74608352 Bma04g01538 Bma-Chr4:51436269 0 wgd
Bma10g00129 Bma-Chr10:1167298 Bma04g01538 Bma-Chr4:51436269 0 wgd
Bma04g00527 Bma-Chr4:4641565 Bma04g01538 Bma-Chr4:51436269 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57257 PF07526 POX 4.30E-47 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01538 - - jre:108982860 734.176