Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01562 ATGTCTGTAAATCACTTCCACTCCGACCTTCCTGCAACTTTCATCTTTCCCCAACACCTTCAACATAATCCAACCATGGAAGACCATACTTCTTCTCAGCAATTCAACTCTCAGTTCTATACCCGCCTGAACCAACCTTGGCCGGTTAATAATTTCAACCTCAACAGAAGAAGCAATGTCTTGGAAGAAGAAGTCGACGACCCAACTGCCGCAGACTGCGGAGAAGACGGCGCGGCCACCGCCTGTCAACGAGAGTGGGAGGAATCGGGGGATAGAGAATCGATGTTCGAAAAGGCACTAACGCCGAGTGATGTCGGAAAACTGAACCGGCTTGTTATTCCGAAACAACACGCCGAGAAATACTTTCCTCTCGGCGGCGCGGGGGACTCCGTCGACAAGGGTTTGCTTCTGAGCTTCGAGGACGAGGCCGGAAAATCGTGGAGGTTCCGTTATTCGTACTGGAACAGTAGCCAAAGCTACGTTCTCACTAAAGGGTGGAGCCGGTATGTTAAAGAGAAGAGGCTGGAATCCGGCGACGTGGTTTTCTTTCAGAGACACCAGACGGACGGCGACCGGCTGTTTATCGGGCTGAGGCGGCGACCGGCGCACGATAGCAGCAGTGCAGTGATGACGCAGGAATGTGATGGTAACAGTAATGGAGGAACTGGGGGTTGGACCAGGTTGTTCCATTCTGCGCACCCTTATCCTGTACACAGCCATCATCACGATCAGCTCCGTCATAATCATCCAGCGCCATGCCAACCTGACTGTCTTCACGCTGGGTCGGCATCCGCCCAGAGCCCCGCAGCATCCGCCGGAAACTCGAGGATCCTAAGACTCTTCGGTGTGAACATGGAGTGCCAAACGGACGTCTCCGGCGACCCATCTGCAAGTCCTCGTTTTCTTTCCGATTTGACCCCACCCAATTCTCGATTCTTCCCCCAGCTTTTTTCTTCAAATCCTCCTAATCATATGGTATGA 981 52.8 MSVNHFHSDLPATFIFPQHLQHNPTMEDHTSSQQFNSQFYTRLNQPWPVNNFNLNRRSNVLEEEVDDPTAADCGEDGAATACQREWEESGDRESMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGAGDSVDKGLLLSFEDEAGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLESGDVVFFQRHQTDGDRLFIGLRRRPAHDSSSAVMTQECDGNSNGGTGGWTRLFHSAHPYPVHSHHHDQLRHNHPAPCQPDCLHAGSASAQSPAASAGNSRILRLFGVNMECQTDVSGDPSASPRFLSDLTPPNSRFFPQLFSSNPPNHMV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51641425 51642672 + Bma020486.1 Bma04g01562 81931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01562 326 Gene3D - 90 209 IPR015300 -
Bma04g01562 326 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 37 290 IPR044800 GO:0003700
Bma04g01562 326 Pfam B3 DNA binding domain 96 200 IPR003340 GO:0003677
Bma04g01562 326 SMART B3_2 96 201 IPR003340 GO:0003677
Bma04g01562 326 CDD B3_DNA 95 199 IPR003340 GO:0003677
Bma04g01562 326 ProSiteProfiles B3 DNA-binding domain profile. 96 201 IPR003340 GO:0003677
Bma04g01562 326 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 37 290 - -
Bma04g01562 326 SUPERFAMILY DNA-binding pseudobarrel domain 92 200 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01562 Bma10g00112 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01562 Bma-Chr4:51641425 Bma05g01206 Bma-Chr5:51476001 8.35E-49 dispersed
Bma04g01367 Bma-Chr4:46933194 Bma04g01562 Bma-Chr4:51641425 4.43E-16 transposed
Bma07g01588 Bma-Chr7:51165277 Bma04g01562 Bma-Chr4:51641425 2.94E-15 transposed
Bma10g00112 Bma-Chr10:1056001 Bma04g01562 Bma-Chr4:51641425 2.77E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57259 PF02362 B3 6.00E-30 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01562 - - zju:107415017 304.679