Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01562 ATGTCTGTAAATCACTTCCACTCCGACCTTCCTGCAACTTTCATCTTTCCCCAACACCTTCAACATAATCCAACCATGGAAGACCATACTTCTTCTCAGCAATTCAACTCTCAGTTCTATACCCGCCTGAACCAACCTTGGCCGGTTAATAATTTCAACCTCAACAGAAGAAGCAATGTCTTGGAAGAAGAAGTCGACGACCCAACTGCCGCAGACTGCGGAGAAGACGGCGCGGCCACCGCCTGTCAACGAGAGTGGGAGGAATCGGGGGATAGAGAATCGATGTTCGAAAAGGCACTAACGCCGAGTGATGTCGGAAAACTGAACCGGCTTGTTATTCCGAAACAACACGCCGAGAAATACTTTCCTCTCGGCGGCGCGGGGGACTCCGTCGACAAGGGTTTGCTTCTGAGCTTCGAGGACGAGGCCGGAAAATCGTGGAGGTTCCGTTATTCGTACTGGAACAGTAGCCAAAGCTACGTTCTCACTAAAGGGTGGAGCCGGTATGTTAAAGAGAAGAGGCTGGAATCCGGCGACGTGGTTTTCTTTCAGAGACACCAGACGGACGGCGACCGGCTGTTTATCGGGCTGAGGCGGCGACCGGCGCACGATAGCAGCAGTGCAGTGATGACGCAGGAATGTGATGGTAACAGTAATGGAGGAACTGGGGGTTGGACCAGGTTGTTCCATTCTGCGCACCCTTATCCTGTACACAGCCATCATCACGATCAGCTCCGTCATAATCATCCAGCGCCATGCCAACCTGACTGTCTTCACGCTGGGTCGGCATCCGCCCAGAGCCCCGCAGCATCCGCCGGAAACTCGAGGATCCTAAGACTCTTCGGTGTGAACATGGAGTGCCAAACGGACGTCTCCGGCGACCCATCTGCAAGTCCTCGTTTTCTTTCCGATTTGACCCCACCCAATTCTCGATTCTTCCCCCAGCTTTTTTCTTCAAATCCTCCTAATCATATGGTATGA 981 52.8 MSVNHFHSDLPATFIFPQHLQHNPTMEDHTSSQQFNSQFYTRLNQPWPVNNFNLNRRSNVLEEEVDDPTAADCGEDGAATACQREWEESGDRESMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGAGDSVDKGLLLSFEDEAGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLESGDVVFFQRHQTDGDRLFIGLRRRPAHDSSSAVMTQECDGNSNGGTGGWTRLFHSAHPYPVHSHHHDQLRHNHPAPCQPDCLHAGSASAQSPAASAGNSRILRLFGVNMECQTDVSGDPSASPRFLSDLTPPNSRFFPQLFSSNPPNHMV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51641425 51642672 + Bma020486.1 Bma04g01562 81931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01562 326 Gene3D - 90 209 IPR015300 -
Bma04g01562 326 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 37 290 IPR044800 GO:0003700
Bma04g01562 326 Pfam B3 DNA binding domain 96 200 IPR003340 GO:0003677
Bma04g01562 326 SMART B3_2 96 201 IPR003340 GO:0003677
Bma04g01562 326 CDD B3_DNA 95 199 IPR003340 GO:0003677
Bma04g01562 326 ProSiteProfiles B3 DNA-binding domain profile. 96 201 IPR003340 GO:0003677
Bma04g01562 326 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 37 290 - -
Bma04g01562 326 SUPERFAMILY DNA-binding pseudobarrel domain 92 200 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01562 - - - zju:107415017 304.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01562 Bma10g00112 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01562 Bma-Chr4:51641425 Bma05g01206 Bma-Chr5:51476001 8.35E-49 dispersed
Bma04g01367 Bma-Chr4:46933194 Bma04g01562 Bma-Chr4:51641425 4.43E-16 transposed
Bma07g01588 Bma-Chr7:51165277 Bma04g01562 Bma-Chr4:51641425 2.94E-15 transposed
Bma10g00112 Bma-Chr10:1056001 Bma04g01562 Bma-Chr4:51641425 2.77E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g941 . . . . Bpe04g01510 . Bma04g01562 Bma10g00112 . Cmo14g00327 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1158 Cone19ag1137 . . . Cme04g02367 . Blo09g00482 Bda03g01650 Bda05g01144 . . . . . . . . Cma14g00333 . Car14g00304 Cpe03g00288 . Bhi11g02352 . . . . . . Cla10g01776 Cam10g1832 Cec10g1886 Cco10g1857 Clacu10g1846 Cmu10g2596 Cre10g1985 Lsi03g01863 Csa03g03451 Chy04g01900 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01562 BCT 91 207 RAV Transcription Factor Family AT2G36080 75.4 8.7e-48 186.8
Bma10g00112 BCT 1 113 RAV Transcription Factor Family AT2G36080 76.3 6.3e-46 180.6
Bma14g00089 BCT 87 203 RAV Transcription Factor Family AT2G36080 66.7 1.2e-41 166.4
Bma04g00935 BCT,CCT,ECH 109 231 RAV Transcription Factor Family AT2G36080 64.3 4.6e-41 164.5
Bma05g01206 BCT,CCT,ECH 47 169 RAV Transcription Factor Family AT2G36080 64.3 1.8e-40 162.5
Bma07g01046 BCT 97 226 RAV Transcription Factor Family AT2G36080 59.1 3.0e-40 161.8
Bma01g00157 CCT,ECH 176 288 RAV Transcription Factor Family AT2G36080 62.3 3.1e-37 151.8
Bma05g01206 BCT,CCT,ECH 41 277 RAV Transcription Factor Family AT2G46870 54.3 1.5e-61 233.4
Bma07g01046 BCT 97 346 RAV Transcription Factor Family AT2G46870 52.3 6.1e-60 228.0
Bma04g00935 BCT,CCT,ECH 83 339 RAV Transcription Factor Family AT2G46870 51.3 1.4e-59 226.9
Bma14g00089 BCT 87 338 RAV Transcription Factor Family AT2G46870 51.0 4.1e-56 215.3
Bma04g01562 BCT 88 201 RAV Transcription Factor Family AT2G46870 69.2 1.8e-40 163.3
Bma10g00112 BCT 1 107 RAV Transcription Factor Family AT2G46870 70.9 9.2e-40 161.0
Bma14g01697 BCT,CCT,ECH 186 298 RAV Transcription Factor Family AT2G46870 63.8 8.6e-38 154.5
Bma15g00077 BCT,CCT,ECH 191 299 RAV Transcription Factor Family AT2G46870 67.9 8.6e-38 154.5
Bma04g01562 BCT 92 247 RAV Transcription Factor Family AT3G11580 58.7 4.4e-47 184.9
Bma10g00112 BCT 1 147 RAV Transcription Factor Family AT3G11580 59.4 1.4e-45 179.9
Bma04g00935 BCT,CCT,ECH 108 226 RAV Transcription Factor Family AT3G11580 61.5 8.1e-41 164.1
Bma05g01206 BCT,CCT,ECH 46 159 RAV Transcription Factor Family AT3G11580 64.0 1.1e-40 163.7
Bma14g00089 BCT 87 204 RAV Transcription Factor Family AT3G11580 60.5 3.4e-39 158.7
Bma07g01046 BCT 97 220 RAV Transcription Factor Family AT3G11580 57.8 4.4e-39 158.3
Bma07g01046 BCT 92 228 RAV Transcription Factor Family AT3G61970 73.1 1.4e-53 206.8
Bma04g00935 BCT,CCT,ECH 109 339 RAV Transcription Factor Family AT3G61970 50.8 5.3e-53 204.9
Bma05g01206 BCT,CCT,ECH 47 277 RAV Transcription Factor Family AT3G61970 52.0 2.2e-51 199.5
Bma15g00077 BCT,CCT,ECH 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.3e-38 157.1
Bma14g01697 BCT,CCT,ECH 188 298 RAV Transcription Factor Family AT3G61970 65.5 3.7e-38 155.6
Bma01g00157 CCT,ECH 177 292 RAV Transcription Factor Family AT3G61970 64.1 1.1e-37 154.1
Bma04g01562 BCT 86 298 RAV Transcription Factor Family AT5G06250 53.2 1.2e-51 200.3
Bma10g00112 BCT 1 202 RAV Transcription Factor Family AT5G06250 56.1 7.6e-51 197.6
Bma05g01206 BCT,CCT,ECH 48 156 RAV Transcription Factor Family AT5G06250 68.1 9.3e-41 164.1
Bma04g00935 BCT,CCT,ECH 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.6e-40 163.3
Bma07g01046 BCT 98 206 RAV Transcription Factor Family AT5G06250 66.4 2.1e-40 162.9
Bma14g00089 BCT 88 196 RAV Transcription Factor Family AT5G06250 66.4 2.7e-40 162.5
Bma01g00157 CCT,ECH 175 288 RAV Transcription Factor Family AT5G06250 60.7 1.1e-36 150.6
Bma11g00635 . 40 256 RAV Transcription Factor Family AT1G51120 56.8 1.7e-66 250.0
Bma14g00711 . 54 180 RAV Transcription Factor Family AT1G51120 58.0 1.1e-36 151.0
Bma14g01697 BCT,CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 62.3 7.1e-110 394.0
Bma15g00077 BCT,CCT,ECH 39 370 RAV Transcription Factor Family AT1G13260 64.0 7.9e-109 390.6
Bma01g00157 CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 60.5 4.2e-102 368.2
Bma14g00089 BCT 89 211 RAV Transcription Factor Family AT1G13260 65.6 6.6e-39 158.3
Bma07g01046 BCT 99 217 RAV Transcription Factor Family AT1G13260 66.7 1.1e-38 157.5
Bma04g00935 BCT,CCT,ECH 106 231 RAV Transcription Factor Family AT1G13260 61.4 9.5e-38 154.5
Bma05g01206 BCT,CCT,ECH 45 156 RAV Transcription Factor Family AT1G13260 69.0 9.5e-38 154.5
Bma10g00112 BCT 1 106 RAV Transcription Factor Family AT1G13260 70.8 2.8e-37 152.9
Bma04g01562 BCT 93 204 RAV Transcription Factor Family AT1G13260 67.9 4.7e-37 152.1
Bma14g01697 BCT,CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 63.8 3.4e-101 365.2
Bma15g00077 BCT,CCT,ECH 27 325 RAV Transcription Factor Family AT3G25730 66.3 4.5e-101 364.8
Bma01g00157 CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 64.4 9.7e-96 347.1
Bma14g01697 BCT,CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 62.3 7.5e-115 410.6
Bma15g00077 BCT,CCT,ECH 1 371 RAV Transcription Factor Family AT1G68840 60.6 1.1e-110 396.7
Bma01g00157 CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 56.9 3.4e-99 358.6
Bma14g00089 BCT 88 201 RAV Transcription Factor Family AT1G68840 68.1 5.2e-39 158.7
Bma05g01206 BCT,CCT,ECH 11 156 RAV Transcription Factor Family AT1G68840 53.3 5.2e-39 158.7
Bma07g01046 BCT 98 221 RAV Transcription Factor Family AT1G68840 62.7 5.2e-39 158.7
Bma10g00112 BCT 1 112 RAV Transcription Factor Family AT1G68840 66.1 4.4e-38 155.6
Bma04g01562 BCT 92 200 RAV Transcription Factor Family AT1G68840 67.9 1.1e-36 151.0
Bma14g01697 BCT,CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 63.8 3.4e-101 365.2
Bma15g00077 BCT,CCT,ECH 27 325 RAV Transcription Factor Family AT3G25730 66.3 4.5e-101 364.8
Bma01g00157 CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 64.4 9.7e-96 347.1
Bma11g00635 . 40 256 RAV Transcription Factor Family AT1G51120 56.8 1.7e-66 250.0
Bma14g00711 . 54 180 RAV Transcription Factor Family AT1G51120 58.0 1.1e-36 151.0
Bma04g01562 BCT 92 247 RAV Transcription Factor Family AT3G11580 58.7 4.4e-47 184.9
Bma10g00112 BCT 1 147 RAV Transcription Factor Family AT3G11580 59.4 1.4e-45 179.9
Bma04g00935 BCT,CCT,ECH 108 226 RAV Transcription Factor Family AT3G11580 61.5 8.1e-41 164.1
Bma05g01206 BCT,CCT,ECH 46 159 RAV Transcription Factor Family AT3G11580 64.0 1.1e-40 163.7
Bma14g00089 BCT 87 204 RAV Transcription Factor Family AT3G11580 60.5 3.4e-39 158.7
Bma07g01046 BCT 97 220 RAV Transcription Factor Family AT3G11580 57.8 4.4e-39 158.3
Bma04g01562 BCT 91 207 RAV Transcription Factor Family AT2G36080 75.4 8.7e-48 186.8
Bma10g00112 BCT 1 113 RAV Transcription Factor Family AT2G36080 76.3 6.3e-46 180.6
Bma14g00089 BCT 87 203 RAV Transcription Factor Family AT2G36080 66.7 1.2e-41 166.4
Bma04g00935 BCT,CCT,ECH 109 231 RAV Transcription Factor Family AT2G36080 64.3 4.6e-41 164.5
Bma05g01206 BCT,CCT,ECH 47 169 RAV Transcription Factor Family AT2G36080 64.3 1.8e-40 162.5
Bma07g01046 BCT 97 226 RAV Transcription Factor Family AT2G36080 59.1 3.0e-40 161.8
Bma01g00157 CCT,ECH 176 288 RAV Transcription Factor Family AT2G36080 62.3 3.1e-37 151.8
Bma04g01562 BCT 86 298 RAV Transcription Factor Family AT5G06250 53.2 1.2e-51 200.3
Bma10g00112 BCT 1 202 RAV Transcription Factor Family AT5G06250 56.1 7.6e-51 197.6
Bma05g01206 BCT,CCT,ECH 48 156 RAV Transcription Factor Family AT5G06250 68.1 9.3e-41 164.1
Bma04g00935 BCT,CCT,ECH 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.6e-40 163.3
Bma07g01046 BCT 98 206 RAV Transcription Factor Family AT5G06250 66.4 2.1e-40 162.9
Bma14g00089 BCT 88 196 RAV Transcription Factor Family AT5G06250 66.4 2.7e-40 162.5
Bma01g00157 CCT,ECH 175 288 RAV Transcription Factor Family AT5G06250 60.7 1.1e-36 150.6
Bma05g01206 BCT,CCT,ECH 41 277 RAV Transcription Factor Family AT2G46870 54.3 1.5e-61 233.4
Bma07g01046 BCT 97 346 RAV Transcription Factor Family AT2G46870 52.3 6.1e-60 228.0
Bma04g00935 BCT,CCT,ECH 83 339 RAV Transcription Factor Family AT2G46870 51.3 1.4e-59 226.9
Bma14g00089 BCT 87 338 RAV Transcription Factor Family AT2G46870 51.0 4.1e-56 215.3
Bma04g01562 BCT 88 201 RAV Transcription Factor Family AT2G46870 69.2 1.8e-40 163.3
Bma10g00112 BCT 1 107 RAV Transcription Factor Family AT2G46870 70.9 9.2e-40 161.0
Bma14g01697 BCT,CCT,ECH 186 298 RAV Transcription Factor Family AT2G46870 63.8 8.6e-38 154.5
Bma15g00077 BCT,CCT,ECH 191 299 RAV Transcription Factor Family AT2G46870 67.9 8.6e-38 154.5
Bma07g01046 BCT 92 228 RAV Transcription Factor Family AT3G61970 73.1 1.4e-53 206.8
Bma04g00935 BCT,CCT,ECH 109 339 RAV Transcription Factor Family AT3G61970 50.8 5.3e-53 204.9
Bma05g01206 BCT,CCT,ECH 47 277 RAV Transcription Factor Family AT3G61970 52.0 2.2e-51 199.5
Bma15g00077 BCT,CCT,ECH 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.3e-38 157.1
Bma14g01697 BCT,CCT,ECH 188 298 RAV Transcription Factor Family AT3G61970 65.5 3.7e-38 155.6
Bma01g00157 CCT,ECH 177 292 RAV Transcription Factor Family AT3G61970 64.1 1.1e-37 154.1
Bma14g01697 BCT,CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 62.3 7.1e-110 394.0
Bma15g00077 BCT,CCT,ECH 39 370 RAV Transcription Factor Family AT1G13260 64.0 7.9e-109 390.6
Bma01g00157 CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 60.5 4.2e-102 368.2
Bma14g00089 BCT 89 211 RAV Transcription Factor Family AT1G13260 65.6 6.6e-39 158.3
Bma07g01046 BCT 99 217 RAV Transcription Factor Family AT1G13260 66.7 1.1e-38 157.5
Bma04g00935 BCT,CCT,ECH 106 231 RAV Transcription Factor Family AT1G13260 61.4 9.5e-38 154.5
Bma05g01206 BCT,CCT,ECH 45 156 RAV Transcription Factor Family AT1G13260 69.0 9.5e-38 154.5
Bma10g00112 BCT 1 106 RAV Transcription Factor Family AT1G13260 70.8 2.8e-37 152.9
Bma04g01562 BCT 93 204 RAV Transcription Factor Family AT1G13260 67.9 4.7e-37 152.1
Bma14g01697 BCT,CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 62.3 7.5e-115 410.6
Bma15g00077 BCT,CCT,ECH 1 371 RAV Transcription Factor Family AT1G68840 60.6 1.1e-110 396.7
Bma01g00157 CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 56.9 3.4e-99 358.6
Bma14g00089 BCT 88 201 RAV Transcription Factor Family AT1G68840 68.1 5.2e-39 158.7
Bma05g01206 BCT,CCT,ECH 11 156 RAV Transcription Factor Family AT1G68840 53.3 5.2e-39 158.7
Bma07g01046 BCT 98 221 RAV Transcription Factor Family AT1G68840 62.7 5.2e-39 158.7
Bma10g00112 BCT 1 112 RAV Transcription Factor Family AT1G68840 66.1 4.4e-38 155.6
Bma04g01562 BCT 92 200 RAV Transcription Factor Family AT1G68840 67.9 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006170 2 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57259 PF02362 B3 6.00E-30 CL0405 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01562 Bma_Chr04 FPKM 6.635766 6.710305 4.898008 3.936683 2.615174 2.699484 3.255307 8.269574 7.983818 7.832525