Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01562 | ATGTCTGTAAATCACTTCCACTCCGACCTTCCTGCAACTTTCATCTTTCCCCAACACCTTCAACATAATCCAACCATGGAAGACCATACTTCTTCTCAGCAATTCAACTCTCAGTTCTATACCCGCCTGAACCAACCTTGGCCGGTTAATAATTTCAACCTCAACAGAAGAAGCAATGTCTTGGAAGAAGAAGTCGACGACCCAACTGCCGCAGACTGCGGAGAAGACGGCGCGGCCACCGCCTGTCAACGAGAGTGGGAGGAATCGGGGGATAGAGAATCGATGTTCGAAAAGGCACTAACGCCGAGTGATGTCGGAAAACTGAACCGGCTTGTTATTCCGAAACAACACGCCGAGAAATACTTTCCTCTCGGCGGCGCGGGGGACTCCGTCGACAAGGGTTTGCTTCTGAGCTTCGAGGACGAGGCCGGAAAATCGTGGAGGTTCCGTTATTCGTACTGGAACAGTAGCCAAAGCTACGTTCTCACTAAAGGGTGGAGCCGGTATGTTAAAGAGAAGAGGCTGGAATCCGGCGACGTGGTTTTCTTTCAGAGACACCAGACGGACGGCGACCGGCTGTTTATCGGGCTGAGGCGGCGACCGGCGCACGATAGCAGCAGTGCAGTGATGACGCAGGAATGTGATGGTAACAGTAATGGAGGAACTGGGGGTTGGACCAGGTTGTTCCATTCTGCGCACCCTTATCCTGTACACAGCCATCATCACGATCAGCTCCGTCATAATCATCCAGCGCCATGCCAACCTGACTGTCTTCACGCTGGGTCGGCATCCGCCCAGAGCCCCGCAGCATCCGCCGGAAACTCGAGGATCCTAAGACTCTTCGGTGTGAACATGGAGTGCCAAACGGACGTCTCCGGCGACCCATCTGCAAGTCCTCGTTTTCTTTCCGATTTGACCCCACCCAATTCTCGATTCTTCCCCCAGCTTTTTTCTTCAAATCCTCCTAATCATATGGTATGA | 981 | 52.8 | MSVNHFHSDLPATFIFPQHLQHNPTMEDHTSSQQFNSQFYTRLNQPWPVNNFNLNRRSNVLEEEVDDPTAADCGEDGAATACQREWEESGDRESMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGAGDSVDKGLLLSFEDEAGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLESGDVVFFQRHQTDGDRLFIGLRRRPAHDSSSAVMTQECDGNSNGGTGGWTRLFHSAHPYPVHSHHHDQLRHNHPAPCQPDCLHAGSASAQSPAASAGNSRILRLFGVNMECQTDVSGDPSASPRFLSDLTPPNSRFFPQLFSSNPPNHMV | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 51641425 | 51642672 | + | Bma020486.1 | Bma04g01562 | 81931 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01562 | 326 | Gene3D | - | 90 | 209 | IPR015300 | - | |
Bma04g01562 | 326 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 37 | 290 | IPR044800 | GO:0003700 | |
Bma04g01562 | 326 | Pfam | B3 DNA binding domain | 96 | 200 | IPR003340 | GO:0003677 | |
Bma04g01562 | 326 | SMART | B3_2 | 96 | 201 | IPR003340 | GO:0003677 | |
Bma04g01562 | 326 | CDD | B3_DNA | 95 | 199 | IPR003340 | GO:0003677 | |
Bma04g01562 | 326 | ProSiteProfiles | B3 DNA-binding domain profile. | 96 | 201 | IPR003340 | GO:0003677 | |
Bma04g01562 | 326 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 | 37 | 290 | - | - | |
Bma04g01562 | 326 | SUPERFAMILY | DNA-binding pseudobarrel domain | 92 | 200 | IPR015300 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma04g01562 | Bma10g00112 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g01562 | Bma-Chr4:51641425 | Bma05g01206 | Bma-Chr5:51476001 | 8.35E-49 | dispersed | |
Bma04g01367 | Bma-Chr4:46933194 | Bma04g01562 | Bma-Chr4:51641425 | 4.43E-16 | transposed | |
Bma07g01588 | Bma-Chr7:51165277 | Bma04g01562 | Bma-Chr4:51641425 | 2.94E-15 | transposed | |
Bma10g00112 | Bma-Chr10:1056001 | Bma04g01562 | Bma-Chr4:51641425 | 2.77E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57259 | PF02362 | B3 | 6.00E-30 | CL0405 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01562 | - | - | zju:107415017 | 304.679 |