Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01593 AAAATGGAAGATCAGTACTCTATGGCCGATCTTAGGCAGCTTATGAATGGAGGGAGGCCCCATTACCCTCCGACTATTTCTCAGCACATTGAGATTTTTCCCGGCTACAGGAATCTCCCGCCACCGTCTGGACAACTTCACCACAACCACCTCCATCAGTACGACCTGATGATGACTCCGGGAAGTCAAGCTTCTGATATGATGACGGAGTTTAGGTCTGATTCTTCGATGGGTTGTGCTCAAGTGGGTGGCGCAGCAACTGCGACCGCCGCTTCGGCGGCTACTTTTAGCAGTGGATTCGAAGTGGAAGCTGCGAGCTATGGCGGTGATGGAGGGTCTGGAAGATGGCCGAGGCAAGAGACGCTTACCCTTTTGGAGATCAGATCTCGTCTGGATTCTAAGTTCAAAGAGGCTAATCAAAAGGGCCCTCTCTGGGATGAAATCTCCAGGATAATGTCTGAAGAATATGGGTATCAAAGAAGTGGGAAAAAATGCAGGGAAAAGTTCGATAATTTGTACAAATATTACAAGAAGACAAAGGAAGGCAAAGCTGGCAGACAAGATGGGAAACACTACAGGTTCTTTCGTCAACTTGAAGCTCTATATGGGGAGACCAGCAATGGAGTTTCAGTTTCAGAAACAAATTTAGTTGGAGATAATGGTTTAAGATTCCATGGCCGAACAGCTCAAGCTAATCAGGAATCCAGCTACCAGTTTCAGAAACACAGCGAGAGCCTCAGTCTGTCTAATTCTTCGGAGTTCGATTCCTCTTCCTCGGACGGTGCTTATGACGTCGGAGTCGGAGGAATAATGGAGAACGACGGTTGGGAAAAGAGGAGGAGGAAGAGAGGGAAATGCTGGAAGGCGAAGATAAAAAAGTTTATCGATTCACAGATGAGAAAGCTGATAGAGAAGCAAGAAGAATGGTTAGATAAGTTAATGAAGAGCCTTGAGCAGAAGGAGAGAGAGAGGATGGTGAAAGAGGAAGAATGGAGGAAAAATGAAGTGTCAAGGATTGAGAGAGAACATAGATTTTGGGCAAGGGAGAGAGCTTGGATCGAAGCTCGAGATTCGGCTTTCATGGAGGTCTTCCGAAAGTTAACCGGAGGAGAAGCAAATAAATCGTCTTCGATTGGCGAAAACCAAAAGGAAGACTTAATCGAGATTACGAACCACAATGGAGAGAAATGGGAAAGTATCAAAGAGTATGTCAAGAAGGAGAGCAACAACAAGAAACGAAAGGAGAATTCGATAAACTTGGATTATTTACGAAGCCAATCGTATGGATATGATCAAGGAGGAACAACCTACGGAGAAATCAAAGAGGAAGCGATCGAAAAGTCGACAAGAGCCGAAACCATCGAAGGGTCTTCACCAAATCATAATCCAAATGCTAATGTTGTTCAAGATAATTGCTTTAGGTTCCTTTTGGGGGAGGGAGAGTCCTTGTGGGAGAATTATGGTACGAAATCTAACAAAGACGATCAAAACCGATCGACTTCTTAA 1506 44.89 KMEDQYSMADLRQLMNGGRPHYPPTISQHIEIFPGYRNLPPPSGQLHHNHLHQYDLMMTPGSQASDMMTEFRSDSSMGCAQVGGAATATAASAATFSSGFEVEAASYGGDGGSGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEISRIMSEEYGYQRSGKKCREKFDNLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGETSNGVSVSETNLVGDNGLRFHGRTAQANQESSYQFQKHSESLSLSNSSEFDSSSSDGAYDVGVGGIMENDGWEKRRRKRGKCWKAKIKKFIDSQMRKLIEKQEEWLDKLMKSLEQKERERMVKEEEWRKNEVSRIEREHRFWARERAWIEARDSAFMEVFRKLTGGEANKSSSIGENQKEDLIEITNHNGEKWESIKEYVKKESNNKKRKENSINLDYLRSQSYGYDQGGTTYGEIKEEAIEKSTRAETIEGSSPNHNPNANVVQDNCFRFLLGEGESLWENYGTKSNKDDQNRSTS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51863077 51865323 + Bma020520.1 Bma04g01593 81962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01593 501 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 33 392 - -
Bma04g01593 501 PANTHER - 33 392 - -
Bma04g01593 501 Gene3D - 116 178 - -
Bma04g01593 501 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 395 482 - -
Bma04g01593 501 Pfam Myb/SANT-like DNA-binding domain 115 201 IPR044822 -
Bma04g01593 501 ProSiteProfiles Myb-like domain profile. 114 173 IPR001005 -
Bma04g01593 501 Coils Coil 303 330 - -
Bma04g01593 501 PANTHER - 395 482 - -
Bma04g01593 501 CDD GT1 115 180 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01961 Bma04g01593 CCT
Bma04g01593 Bma10g00079 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01904 Bma-Chr1:70275486 Bma04g01593 Bma-Chr4:51863077 9.26E-53 dispersed
Bma04g00570 Bma-Chr4:5159558 Bma04g01593 Bma-Chr4:51863077 4.23E-127 dispersed
Bma01g01959 Bma-Chr1:72674724 Bma04g01593 Bma-Chr4:51863077 1.73E-134 wgd
Bma10g00079 Bma-Chr10:799677 Bma04g01593 Bma-Chr4:51863077 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57262 PF13837 Myb_DNA-bind_4 1.10E-19 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01593 - - tcc:18598163 496.508