Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01607 ATGCATTACAGTAACTTGCTTCTGGAAGAGCCCATAAGGATGGCTTCGATACTGGAGCCATCCAAGGCGGGGTTCTTTCCTGCGATGACGAAGATAGTGGGGACTCTGGGTCCGAGGTCTCGATCCGTTGATGTTATTACTGGCTGCCTCAGAGCGGGAATGTCTGTGGCTCGGTTCGACTTTTCATGGGGTAGCCCGGAATATCATCAGGAGACTTTGGAGAATCTGAAGTCCGCTGTTAAATGCTCTCACAAGCTTTGTGCTGTTATGCTGGACACGGTCGGTCCGGAGTTGCAGGTTGTGAATAAAAGTGAGAAATCTATCTCACTTCAAGCAGATGGGATCATTGTGTTGACGCCCAATCAAGAACTCGAGGCCTCTTCAGAGCTTTTGCCTATCAATTTTAATGGACTTTCTAAGGCTGTGAAGAAGGGTGACACCATTTTTGTTGGTCAATACCTATTCACTGGAAGTGAAACTACCTCTGTCTGGCTGGAGGTTTCTAAAGTGGACGGTGAGGATGTCGTTTGTGTGATAAAGAATACAACCACATTGGTTGGATCACTGTTTACCTTGCATGCCTCTCAAGTTCGTATCGATCTGCCAACATTCTCCGATAAAGATAAGGAGGTAATAAGCACTTGGGGATCTCAAAACAAAATTGATTTCCTATCTTTGTCGTACACCCGACACGCTGAGGATGTTCGACAAGCCCGGGAATTCCTTTCGAAGTGTGGGGACCTTAGCCAAACTCAAATTCTTGCCAAAATCGAAAACATTGAGGGATTGACTCACTTCGATGAAATTCTTCAAGAAGCCGATGGCATTATACTGTCCAGAGGGAATTTGGGAATAGATCTTCCACCTGAGAAGGTGTTCTTGTTTCAGAAGGCTGCCCTTTTCAAATGTAACATGGCTGGAAAGCCGGCTATAGTTACTCGTGTTGTGGACAGCATGACTGCAAATTTAAGACCTACTCGTGCCGAAGCCACCGATGTTGCCAATGCGGTACTAGACGGGAGTGATGCCATTCTTCTCGGCGCCGAAACTTTGCGCGGGTTATACCCTGTCGAAACTATTTCCATAGTCGGTAGAATCTGTGCCGAGGCAGAGAAGGTTTTCAATCAAGACCTCTACTTCAAAAAGACGTCCAAATACGTCGGCGAACCGATGTCGCACCTGGAATCAATCGCATCGTCGGCGGTGAGAACAGCCATTAAGGTGAAGGCTTCTTTGATTATTTGTTTCACGTCATCAGGACAGACTGCAAGATTGATCGCCAAGTATAGACCGACTATGCCAGTAATCTTGGTAATTATACCTCGGCTCAAGACGAATCGAATCAAGTGGAGCTTCAGCGGAGCATTTGAGGCAAGACAATCGCTAATAGTTAGAGGTCTCTTTCCCATGCTTGCCGGTCCCCCGCAACTTGCGGAATCCATTGGGGGAACAAACGAATCGGTCCTTAAGGTGGCGCTTGCTCATGGGAAAGATTCGGGAGTTGTAAAACCGCACGATCGAATTGTCGTGTGCCAGAAAGTCGGGGATTCATCTGTGGTCGAGGTTATTGAACTCGAGGGTTAA 1584 47.16 MHYSNLLLEEPIRMASILEPSKAGFFPAMTKIVGTLGPRSRSVDVITGCLRAGMSVARFDFSWGSPEYHQETLENLKSAVKCSHKLCAVMLDTVGPELQVVNKSEKSISLQADGIIVLTPNQELEASSELLPINFNGLSKAVKKGDTIFVGQYLFTGSETTSVWLEVSKVDGEDVVCVIKNTTTLVGSLFTLHASQVRIDLPTFSDKDKEVISTWGSQNKIDFLSLSYTRHAEDVRQAREFLSKCGDLSQTQILAKIENIEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALFKCNMAGKPAIVTRVVDSMTANLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGRICAEAEKVFNQDLYFKKTSKYVGEPMSHLESIASSAVRTAIKVKASLIICFTSSGQTARLIAKYRPTMPVILVIIPRLKTNRIKWSFSGAFEARQSLIVRGLFPMLAGPPQLAESIGGTNESVLKVALAHGKDSGVVKPHDRIVVCQKVGDSSVVEVIELEG 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51996539 52001355 + Bma020535.1 Bma04g01607 81976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01607 527 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 Gene3D - 30 362 IPR040442 -
Bma04g01607 527 Gene3D - 363 525 IPR036918 -
Bma04g01607 527 TIGRFAM pyruv_kin: pyruvate kinase 30 515 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 8 375 IPR015813 GO:0003824
Bma04g01607 527 SUPERFAMILY PK beta-barrel domain-like 96 186 IPR011037 -
Bma04g01607 527 Pfam Pyruvate kinase, alpha/beta domain 395 515 IPR015795 -
Bma04g01607 527 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 PANTHER PYRUVATE KINASE 2 526 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Bma04g01607 527 SUPERFAMILY PK C-terminal domain-like 358 514 IPR036918 -
Bma04g01607 527 Gene3D - 97 201 IPR015806 GO:0004743|GO:0006096
Bma04g01607 527 PANTHER PYRUVATE KINASE 2 526 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01607 Bma-Chr4:51996539 Bma07g01367 Bma-Chr7:49299899 2.52E-129 dispersed
Bma03g00372 Bma-Chr3:2830458 Bma04g01607 Bma-Chr4:51996539 0 transposed
Bma04g00566 Bma-Chr4:5122155 Bma04g01607 Bma-Chr4:51996539 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01607 K00873 - rcu:8274900 905.205