Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01608 ATGGAACAACGTACAAAGTATCAGGTATCGTTGAGGGGGACAAGTACCAAAGAAATTTCAAGGGATGCCCTACTTGAAAAGGTCATTCAGGAAAGAGAGCTCCGACACTATGCGAGAAGAGCTTCCGCTGCTGTTCTCATTATTCAGAGAGTTTGGAGGCGCTATAAGGTGACCAAAGAGGCTGCTTTTCTGCTTCAGGAAGAATGGGAACAGTTGGTGAAAAATTCTGAAGGCATCATGACCAGACAAATTATTTCTGAAAAGATTTTGAGGCCATTTCTTTTTTTCATCTCATGCTTATCAACCCGGCTTCATAAGGTGCAGAACAGAGAAATTGTGTGTGCAAAGAATTGCTTTAAAATCCTGTTGGAAAGCATGAACTCCAGTGAATCAGAGAACAATTTTTGCTCCCTTTCCATGGGTACATCCGAAGAAAGAAGAATTTGGATTTATCAATCTCGGAAGTTGATTTCCCTCTGCATATTTGTTCTTTCCCAATTTGACAAATCACATGCAAACGATCAAGAAATTGTTGCTTTAACTTCTCTAGCAATGCGTCTCGCTGTTATATTAACTGATACTAAAAGCTGGAAAAACATTACGGATAGAAATCAGGATGCCGCTGTGGCAGTCAAGAATTTAATTCGATTTATGGGGAGTGCTGAAAGTGGTCTCTATATTTCAATCAGACAGTACATGAATAGATTGAACGTACATCTGACTTTACCGAACTGTGTCCAGACAAATGATGAGCTCTTGATAGTTGCAAGTGCAATAACTTTAGCTCTGCGACCGTTTCATTTAACAGCTTTTGATCTGAATTTACCTGATTCATGGGAAGGGCGTTTTGCTGCCGAACAGTTTTGCTTGCTTGTACTTACGGTTCCTTGGTTTATGCAACGTCTCCCAGCAGTTCTTTTACCAGCTGTGAAGCACAGGTCTATTTTGTTACCGTGCTTGTGGACTATATTGGTTTCGAAAGATAAAGTTTTACAGGAAATGTCTAAATTGGATCAACCAAGAGTCAGTTCTTGTTCTGAACTTGCTCCATCTGTTGGGTGGGTTCTTGCAAACATTATCTCTCTGGTGACAGGCAGTGAAAATAACTCTATTGATCCTGGATGGTTCCAACAAGGTTTTGACTATGCGTTGTATGTCCTTGCAACATTAGCTTTGGCTAAAAACTTTTTAACTGTGCTTAGAGATGTTAGATGTCAAAAGGTCAATCAGAATCAATATAATCTGGGTCTTCCAGAAACTTTATCAGACCTTTCTGCTGCAGTTGGACCTGAGAGTGAGACAGGACCCAAGTCTTCAACTCTGCCGTACCGTGATATGTTTAGGCCTGTTTTTCAACAGTCACATCTTTCCAATCTTTTGGCACTTGTGAATAAAATGACCCCCGTTGCAACTGTGACTGCACCTCCAATAAGATTGGAATATTTGCGGAACGTGGAACTGGTTGATATTGTGTATTTTTATTCTTACATGCTACAAATATTATCATTCTTGAACCCTATGGTTGGATCATTACCTATTCTCAATTTGCTATCTTTTACTCCTGGATTTCTTGTTGACATATGGCATGTGTTGGAAAGTTGCCTTTTTCCTGTTGGTGGGAATGCAGAGGATAAATCATCTTGTGCGGGTAAGATATCAAAAAATAAAAACAATAGGACTCTTGAGAAAATGCAAAAGCAAACGAGCAAGGATGGAGCTCATAAATGGGTAGCTGCATTGCACAAGTTTACTAGCAAACCACAGGCAGGTGGTGATTATATTGATGCAAGGTTAGATGAAGAATCAAGTAATGAATGGGATGTAATATCTTTGGGTCTTGGTCCGGAAGGTGTTTCGAAAGATACATTATGTCTACTCTACCTTTTCAGTGCCACTTATTCTCATCTTCTATTAATTCTAGATGACATAGAGTTCTATGAAAAGCAGGTCCCTTTCACGTTGGAACAGCAAAGAAGGATTTCATCTGTGCTCAATACATTAGTGTACAATGGCTTATCTCGTGGTATCAGAAAGCAGAACAAACTCATTCTGGATTCTGCTATCAAATGCTTGCATCTCATGTACGAGAGGGATTGCAGACACCAGTTTTGTTCCAGTGATCTTTGGCTTTTTCCTGCTAGGAAAAGCCGCCCCACTGTGGCAGTTGCAGCTAGAACTCATGAAGTGCTGTCAGCTAATCAAATATCAGACGATTCTTTGACTGTTCCAGCTACAAACTCTGTTATAACAACCACGCCACACGTATTTCCATTTGAGGAAAGAGTTGAAATGTTTAGAGAGTTTGTCAGGATGGACAAAGTCTCTCGAAAAATGGCTGGGGAAATTTCTGAACCTGGTTCACGATTAGTGGAAATTGTAGTTCGGCGCAGTCACATTGTTGAAGATGGATTCCGACAATTGAATTCCCTTGGGCCAAGGTTGAAATCGTTTATCCATGTCTCTTTTGTTAGTGAATGTGGCCTTCCTGAAGCTGGTCTTGATTGTGGTGGATTATCCAAGGAGTTTTTAACTGACATAGCCAAAGCAGCTTTTGCCCCTGAGTATGGGCTATTCTCCCAAACTTCTACTTCAGATAGACTTTTGATTCCTAATACATCTGCAAGATATCTTGAAAATGGCATCCAGATGATAGAATTTCTGGGTAGAATTGTTGGTAAAGCTCTATATGAAGGAATATTACTTGATTACTCTTTTTCACATATCTTTGTGCAAAAGCTCTTAGGACGGTATAGCTTTTTGGATGAACTATCTACGCTCGATCCAGAGCTCTATAAGAATCTCATGTATGTGAAGCACTGTACCGGTGATGTCAAGGAATTATCCCTGGATTTCACTGTTACTGAAGAATCATTTGGAAAATGGCGTGTTATAGATCTTATACATGGTGGCAAGAATATTCCTGTTACAAATGATAACAAGATGCAGTATGTTCATGCAATAGCAGATTATAAACTTAACCGACAGATACTTCCCTTTTCAAATGCATTTTACAGAGGACTAACTGATCTCGTATCACCATCTTGGTTGAAATTATTTAATGCAAATGAATTTAATCAGTTGCTTTCAGGTGGGAAATATGACATTGACGTGAAGGATTTGAGAAATAATACACGTTATACTGGTGGCTACACAGAAGGAAGCCGTACCATTAAAATTTTTTGGGAGGTTATTGAAGAATTTGAGCCAAAAGAACGTTGTATGCTTCTTAAATTTGTTACAAGTTGTTCTCAAGCTCCTTTGCTGGGGTTCAAACACTTGCAACCAACCTTTACTATCCATAAAATTACTTGTGATGTTCCTATCTGGGCCTCGATAGGAGGGCAGGACGTGGATCGGCTTCCATCAGCTTCCACGTGCTATAATACTCTAAAGCTACCAACCTACAAACGCCCAAGCACCTTGAGAGCCAAGCTTCTGTATGCAATCAATTCCAATTCAGGATTCGAGCTTTCTTGA 3477 39.8 MEQRTKYQVSLRGTSTKEISRDALLEKVIQERELRHYARRASAAVLIIQRVWRRYKVTKEAAFLLQEEWEQLVKNSEGIMTRQIISEKILRPFLFFISCLSTRLHKVQNREIVCAKNCFKILLESMNSSESENNFCSLSMGTSEERRIWIYQSRKLISLCIFVLSQFDKSHANDQEIVALTSLAMRLAVILTDTKSWKNITDRNQDAAVAVKNLIRFMGSAESGLYISIRQYMNRLNVHLTLPNCVQTNDELLIVASAITLALRPFHLTAFDLNLPDSWEGRFAAEQFCLLVLTVPWFMQRLPAVLLPAVKHRSILLPCLWTILVSKDKVLQEMSKLDQPRVSSCSELAPSVGWVLANIISLVTGSENNSIDPGWFQQGFDYALYVLATLALAKNFLTVLRDVRCQKVNQNQYNLGLPETLSDLSAAVGPESETGPKSSTLPYRDMFRPVFQQSHLSNLLALVNKMTPVATVTAPPIRLEYLRNVELVDIVYFYSYMLQILSFLNPMVGSLPILNLLSFTPGFLVDIWHVLESCLFPVGGNAEDKSSCAGKISKNKNNRTLEKMQKQTSKDGAHKWVAALHKFTSKPQAGGDYIDARLDEESSNEWDVISLGLGPEGVSKDTLCLLYLFSATYSHLLLILDDIEFYEKQVPFTLEQQRRISSVLNTLVYNGLSRGIRKQNKLILDSAIKCLHLMYERDCRHQFCSSDLWLFPARKSRPTVAVAARTHEVLSANQISDDSLTVPATNSVITTTPHVFPFEERVEMFREFVRMDKVSRKMAGEISEPGSRLVEIVVRRSHIVEDGFRQLNSLGPRLKSFIHVSFVSECGLPEAGLDCGGLSKEFLTDIAKAAFAPEYGLFSQTSTSDRLLIPNTSARYLENGIQMIEFLGRIVGKALYEGILLDYSFSHIFVQKLLGRYSFLDELSTLDPELYKNLMYVKHCTGDVKELSLDFTVTEESFGKWRVIDLIHGGKNIPVTNDNKMQYVHAIADYKLNRQILPFSNAFYRGLTDLVSPSWLKLFNANEFNQLLSGGKYDIDVKDLRNNTRYTGGYTEGSRTIKIFWEVIEEFEPKERCMLLKFVTSCSQAPLLGFKHLQPTFTIHKITCDVPIWASIGGQDVDRLPSASTCYNTLKLPTYKRPSTLRAKLLYAINSNSGFELS 1158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52012018 52020746 + Bma020536.1 Bma04g01608 81977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01608 1158 CDD HECTc 791 1156 IPR000569 GO:0004842
Bma04g01608 1158 Gene3D Hect, E3 ligase catalytic domain 1033 1157 - -
Bma04g01608 1158 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1158 - -
Bma04g01608 1158 Pfam HECT-domain (ubiquitin-transferase) 845 1158 IPR000569 GO:0004842
Bma04g01608 1158 SUPERFAMILY Hect, E3 ligase catalytic domain 790 1151 IPR035983 GO:0004842
Bma04g01608 1158 Gene3D Hect, E3 ligase catalytic domain 916 995 - -
Bma04g01608 1158 ProSiteProfiles HECT domain profile. 814 1158 IPR000569 GO:0004842
Bma04g01608 1158 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1158 IPR044611 GO:0000209|GO:0061630
Bma04g01608 1158 SMART hect_3 808 1158 IPR000569 GO:0004842
Bma04g01608 1158 Gene3D Hect, E3 ligase catalytic domains 792 1030 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01608 Bma04g00619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01608 Bma-Chr4:52012018 Bma08g00752 Bma-Chr8:43967032 2.18E-23 dispersed
Bma02g00118 Bma-Chr2:1109452 Bma04g01608 Bma-Chr4:52012018 2.16E-54 transposed
Bma05g01010 Bma-Chr5:48579649 Bma04g01608 Bma-Chr4:52012018 1.01E-97 transposed
Bma13g01122 Bma-Chr13:44317846 Bma04g01608 Bma-Chr4:52012018 3.20E-51 transposed
Bma04g00619 Bma-Chr4:5881197 Bma04g01608 Bma-Chr4:52012018 6.29E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01608 K10588 - zju:107432043 1515.36