Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01610 ATGGCGGTCGCTCCGACGGCGTCCACCAACTTACTTTCGCTTTACGTTGGTGATCTTCATCCCGACGTCACGGAGGAGATTCTTCGTGATGCTTTCTCCCAATTCGAGAGCCTCGCCTCGGTTCGAGTCTCCAGGGACTCTGCTACTGGCAGATCCCTCTGTTACGGTTACGTCAATTTCGTCGCTCATCAAGATGCAACCAACGCTATCCGGGAAAAGAATCACAGTATTTTGAATGGAAAGATGATGAGAGTCATGTGGTCACATCGTGATTCCGATGCGAGGAAAAGTGGAATTGGCAATGTGTTTGTCAAGAACTTGAGTGATTCGGTCAGTAGTATGGAGCTTGAAGAAATGTTTGGTCGTTTTGGAAATATTGTCTCCTGCAAAGTTCCCATGACTGAGGACGGGAAGAGCAGATGTCACGGCTTTGTACAGTTTGAGTCAGAAAATTCTGCAACTGCTGCTATTGAGAAGTTAAATGGCTTAAATATAGATGGGAAGGAAATCTATGTTGGAAAGTTCATCAAGAAAATCGACCGAGTTATGGCTTCTAGCACTGATACTAAATTTACAAATTTGTATGTGAAGAATTTGGATCCAGAAATTGGGGAGGAGCTTCTGCATACAAAGTTTTTGGAGTTTGGAAATATTGCTAGCTTGGTTATTGCAAAGGATGACAATGGAATATCTAAAGGTTTTGGGTTTATAGACTTTGATAACTCTGATGATGCTAAGCGTGCAATGGAAGTGATGAACGGATCACAAGTTGGTTCAAAGGTTCTCTATGTAGCAAAGGCACAGAAGAAGACAGAGCGCCAACAAATGTTACGCAGACAGTTTGAAGAAAAGTGCAAGGACCAACACAAGGGCTTAAATGTGTATGTAAAGAATATTGATGATGATGTCACGACTGAAGATCTCGCAAAACATTTCAGTCAGTGTGGCACAATTACTTCCGCAAAAATTATGCAGAACGACAAAGGAATAAGCAAAGGGTTTGGATTTGTTTGCTTCTCTTGTCAGGAGGAGGCAAATAAAGCAGTGAGCACCTTTCATGGACATATGTTTCAAAACAAGCCGTTGTATGTGGCTATTGCTCAAAGAAAAGAGGAAAGACAAGCTCAACTGCAACATCATTTTGCTCAGCGTAGAGCTGGACTAGTTCCTGGCGGATATCCTTCCTACCACTACACATCTCCTCTTGGTTCTCTTCCAGCTCCACCTACGCCACAGAGACCAGGCCTGATGTATCAATCTTTACGGTTAAGGCCAGTATGGAGGTCCAATAACTTTGCTTCTCCAATTGGACCTAGCTTTCAACCGTTACCTGGCACTCTTATTCTTAGACAAGGTATGCACAACAGGGTAAGGTCGAATGGCCAAACGGTTGCTCAAAACAACGCTCACGCTGGTTCCAACGATTCAGGCTTTAAACAGGTTCCTTTACTACAGGATGGACAGTCTCATTATACCCGTTCCAAAACAGCTGGAGCTGGATCAGAGGACTCAGTGGTACTGAGCTGTAAGCTTGCTGCTGCTTCTCCTGATCAACAGAAACAAATACTTGGGGATCGTCTCTATCCACTAGTCGAAAATTATAAGCCGGATCTTGCTGCAAAAATTACAGGAATGCTTCTGGAGATGGACAGCGTGGAATTGCTACACTTATTGGAGTCACCCGAGTCGCTGGCTGCCAAAGTAGACGAAGCAATCCAAGTTCTGAAGATGTCAAAGACCAAAGTATCGAGCCAAGACTCAGTTCACAACTCCAGTTTTCTATCAACTGAGGTTGCTGCCAATTGA 1806 43.96 MAVAPTASTNLLSLYVGDLHPDVTEEILRDAFSQFESLASVRVSRDSATGRSLCYGYVNFVAHQDATNAIREKNHSILNGKMMRVMWSHRDSDARKSGIGNVFVKNLSDSVSSMELEEMFGRFGNIVSCKVPMTEDGKSRCHGFVQFESENSATAAIEKLNGLNIDGKEIYVGKFIKKIDRVMASSTDTKFTNLYVKNLDPEIGEELLHTKFLEFGNIASLVIAKDDNGISKGFGFIDFDNSDDAKRAMEVMNGSQVGSKVLYVAKAQKKTERQQMLRRQFEEKCKDQHKGLNVYVKNIDDDVTTEDLAKHFSQCGTITSAKIMQNDKGISKGFGFVCFSCQEEANKAVSTFHGHMFQNKPLYVAIAQRKEERQAQLQHHFAQRRAGLVPGGYPSYHYTSPLGSLPAPPTPQRPGLMYQSLRLRPVWRSNNFASPIGPSFQPLPGTLILRQGMHNRVRSNGQTVAQNNAHAGSNDSGFKQVPLLQDGQSHYTRSKTAGAGSEDSVVLSCKLAAASPDQQKQILGDRLYPLVENYKPDLAAKITGMLLEMDSVELLHLLESPESLAAKVDEAIQVLKMSKTKVSSQDSVHNSSFLSTEVAAN 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52037302 52041083 - Bma020538.1 Bma04g01610 81979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01610 601 PANTHER RNA BINDING PROTEIN 11 585 - -
Bma04g01610 601 SMART rrm2_1 101 173 IPR003954 GO:0003676
Bma04g01610 601 SMART rrm2_1 193 265 IPR003954 GO:0003676
Bma04g01610 601 SMART rrm2_1 293 365 IPR003954 GO:0003676
Bma04g01610 601 CDD RRM1_I_PABPs 13 91 - -
Bma04g01610 601 Gene3D - 102 173 IPR012677 -
Bma04g01610 601 Gene3D - 5 101 IPR012677 -
Bma04g01610 601 PANTHER POLYADENYLATE-BINDING PROTEIN 11 585 - -
Bma04g01610 601 Gene3D - 282 383 IPR012677 -
Bma04g01610 601 Gene3D - 177 281 IPR012677 -
Bma04g01610 601 Coils Coil 264 284 - -
Bma04g01610 601 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 576 IPR006515 GO:0003723
Bma04g01610 601 SUPERFAMILY RNA-binding domain, RBD 13 176 IPR035979 GO:0003676
Bma04g01610 601 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 503 580 IPR002004 GO:0003723
Bma04g01610 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Bma04g01610 601 SUPERFAMILY PABC (PABP) domain 507 590 IPR036053 GO:0003723
Bma04g01610 601 SMART poly_2 515 578 IPR002004 GO:0003723
Bma04g01610 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Bma04g01610 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bma04g01610 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Bma04g01610 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Bma04g01610 601 CDD RRM2_I_PABPs 98 174 IPR045305 -
Bma04g01610 601 SUPERFAMILY RNA-binding domain, RBD 191 372 IPR035979 GO:0003676
Bma04g01610 601 Pfam Poly-adenylate binding protein, unique domain 511 575 IPR002004 GO:0003723
Bma04g01610 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bma04g01610 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 369 IPR000504 GO:0003723
Bma04g01610 601 SMART rrm1_1 101 173 IPR000504 GO:0003723
Bma04g01610 601 SMART rrm1_1 193 265 IPR000504 GO:0003723
Bma04g01610 601 SMART rrm1_1 293 365 IPR000504 GO:0003723
Bma04g01610 601 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bma04g01610 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Bma04g01610 601 Gene3D - 503 596 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01610 Bma10g00064 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00511 Bma-Chr3:3976725 Bma04g01610 Bma-Chr4:52037302 2.14E-21 dispersed
Bma04g01610 Bma-Chr4:52037302 Bma08g00805 Bma-Chr8:45649075 1.08E-21 dispersed
Bma10g00925 Bma-Chr10:18806833 Bma04g01610 Bma-Chr4:52037302 3.12E-07 dispersed
Bma01g01417 Bma-Chr1:23244438 Bma04g01610 Bma-Chr4:52037302 2.46E-06 transposed
Bma10g00064 Bma-Chr10:605967 Bma04g01610 Bma-Chr4:52037302 1.30E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01610 K13126 - qsu:111991978 728.398