Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01612 ATGTCTCCGGCAATGGCAATAGTTACTGCACAGAGAAAGGAAGAAAGCCTCTCGGAAAATATCCAATACCAGAAAGGAGTGAAGCTCCTTTTAGAGAATGGACTAACCAAACTCCCATCCAAATACGTGTTACCCAATTCCGATCGTCCCTCCGCCGATAAACAATCCAAAATATCAGTTACCGATGACCGTCTTCAGTTGCCTGTAATCGATTTTGCAGAATTGCAAGGCTCTCGCAGGTCTCAAATCCTCCGGTCCCTCGCCAATGCTTGTGAAAAGTACGGTTTTTTCCAGTTGGTGAACCATGGCATTAATGGCGACGTTATAAGGAGTATGATGGAAGTGAGCAAGAGGTTTTTCCAGCTTCCATTTGAGGAGAGAGCTAAGTATATGAGCTCCGATATGAGCTCGCCGGTCCGATATGGAACCAGCTTTAACCAAAACAAAGACCAAGTCTTTTGCTGGAGAGACTTCTTGAAGCTAACCTGCCGCCCTTTATCAGAATCTCTCCCTCATTGGCCTTCTTCTCCGGCGGATTTCAGGGAATCGGCGGCTACCTACGCAGAAGAAACAAGAGGGCTGTTTTTAATGCTGGTGGAAGCCATTGTTGAGAGCTTAGGACTTGAAAGAGACGATGACGATATTCTGAAACAAGTAGAAGACGGTAGCCAATTAATGGTGGTGAATTGCTACCCACCTTGTCCAGAACCAGATTTAACCCTAGGTATGCCACCTCACTCTGATTATGGCTTCCTCACTCTTCTTCTTCAAGACCAAGTTGAGGGCCTCCAAATCCATCGCGAGGATAAATGGGTCACCGTACAACCCATCGCCGACTCGTTCGTCATTAACGTCGGCGATCACCTTGAGATATTCAGCAACGGAAGATACAAGAGTGTTCTACACCGAGTTCTAGTGAATTCCAGTAAATTAAGGATGTCCATCGCTTCTCTCCATAGTCTTCCGATCAAATCCATGGTTCGACCGTCATCCAAGCTCATCGACGAAGATAATCAGAGGCGGTACAAAGACACAGATTTCGCGACCTTCTTGGAGTACATTTCATCTCGAGAGCCCAAGGGAAAGAATTTCTTGGAGTCTAGAAAAATGACATTAGATAGCAATTAA 1128 45.74 MSPAMAIVTAQRKEESLSENIQYQKGVKLLLENGLTKLPSKYVLPNSDRPSADKQSKISVTDDRLQLPVIDFAELQGSRRSQILRSLANACEKYGFFQLVNHGINGDVIRSMMEVSKRFFQLPFEERAKYMSSDMSSPVRYGTSFNQNKDQVFCWRDFLKLTCRPLSESLPHWPSSPADFRESAATYAEETRGLFLMLVEAIVESLGLERDDDDILKQVEDGSQLMVVNCYPPCPEPDLTLGMPPHSDYGFLTLLLQDQVEGLQIHREDKWVTVQPIADSFVINVGDHLEIFSNGRYKSVLHRVLVNSSKLRMSIASLHSLPIKSMVRPSSKLIDEDNQRRYKDTDFATFLEYISSREPKGKNFLESRKMTLDSN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52067343 52069380 - Bma020541.1 Bma04g01612 81981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01612 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 21 370 - -
Bma04g01612 375 Gene3D - 17 353 IPR027443 -
Bma04g01612 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 67 168 IPR026992 -
Bma04g01612 375 SUPERFAMILY Clavaminate synthase-like 25 357 - -
Bma04g01612 375 Pfam 2OG-Fe(II) oxygenase superfamily 225 319 IPR044861 -
Bma04g01612 375 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-RELATED 21 370 - -
Bma04g01612 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 321 IPR005123 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00555 Bma-Chr4:4836341 Bma04g01612 Bma-Chr4:52067343 2.41E-33 dispersed
Bma04g01612 Bma-Chr4:52067343 Bma12g00354 Bma-Chr12:5922301 7.87E-86 dispersed
Bma15g00394 Bma-Chr15:4389542 Bma04g01612 Bma-Chr4:52067343 6.00E-19 dispersed
Bma04g01612 Bma-Chr4:52067343 Bma01g01742 Bma-Chr1:55894794 6.92E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01612 - - qlo:115952059 541.962