Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01614 ATGAGGATGGTGAAAAGGTCTGCATCGAGTAAGAGGTTAATGACAGTGAGGGAGCTATTTGATACTGGTTTTCTGGAAGGAGTATCTGTTGTATATATGGGTACCAGGAAGGGGATCGATTATGGTCTGCGTGGGACGATTAAAGATGGTGGGATTTTATGTACATGCCTGTCCTGTAATGGAAGCAAGGTTATTACTCCATCCAAATTTGAGATTCATGCTTGCAAACAATACAAACGAGCAGCACAGTATATATGCCTCGAAAATGGTACGAGCCTATTAGACTTGCTGAAGGCATGCAGGGGAAACGCCATGCATAAACTGGAGGCAACGATTCAAAAGGTGGTCAATTCTTCATCGGAAGAGGAAAATTTCACTTGCAGAAGTTGTAAAGGATGCTTTCGTGCATCATGGGTGGCGCAAGTTGGAGCTTTATGCACTTCATGTGCAGAGTCAAACGAATCAGAGTCCACCCCTACCCCACAAACGCCACCACCTTCTGCAACTAATAAGAGGCTCAGGTCACCAATGCCAGTCAAGATCAAAAAGTCTCCTAAAAGAACTCCAGTGCACATCTCTTCACAAAAAAGTAAATCAATGATAAGAACAAAGACATCAAAGCGAGATCTGACCTCAATGTCCTCAAAGAGTGCTCCACCGCGTATCCGAACACAAAAAAGGAGCTCTTGGAAGATCAAAAAAAGGTTTTCAAAGCCAGATTTCATGTTGAAATCCTCAAAAAGCACTCCAAAGTCCATTACTTCACAAATCAAAAGTCAATGGAAGATAACAACAAAGAGAGATCAACGGTTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGAAGGAACTGAATTAGCATATTTTGCTCGGGGACAGAAATTGCTCCAAGGTTACAAGAAGGGTTCGGGAATTTTTTGCTTTTGCTGCAACTGTGAGGTTAGTCCTTCTCAATTTGAAGTTCATGCTGGTTGGTCGTCTCGGAAAAAACCCTATGCGTACATTTATACGTCAAATGGGGTGTCTCTCCATGAATTAGCAATCTCCCTCTCAAAAGGCCGAAAATTTTCCGCCAGTGATAATGATGATGTATGCATTATATGTCTAGATGGAGGGAATCTTCTACTCTGTGATGGTTGCCCAAGGGCTTTCCACAAAGAATGTGCATCTCTACCGAGTGTTCCTCGTGGTGATTGGTATTGTAAATTTTGCGAGAATATGTACCAAAGAGATAAATTTGTAGAGTACAATGAAAATGCTGTTGCTGCGGGAAGGATTTCTGGAGTTGATCCCATAGATGATATATCCAAAAGATGTATTCGAATAGTAAAAAATATCGAAAGTGAACTTAGTGGATGTGTGTTATGCCGAGGGTCGGATTTTAGCAAATCCGGATTTGGTCCTTGGACAATTATACTTTGTGATCAGTGTGAGAAGGAATTTCATGTTGGCTGTTTGAAGGAGCATAAAATGGCGTTTCTTGAGGAACTACCAAAAGGGAAGTGGTTTTGTGGGCCAGATTGCACTAGGATACATTCTTCTCTGCGGAAGCTGCTCGTCCACGGGGAAGAGAAGGTTCCGGATTCCCTCCGAAGTGTTGCCAACAGGAAGTTATTGGAAAAAGGCTTAGGTCCTGGAAATGATATCGATATCAGATGGCGGCTTATCAGTGGAAAAATTGCTTCGCCCGATACTAGGCCTCTACTCTCAGAAGCTGTTGCAATCTTCCACGATTGCTTTGATCCGATAATTGATATAACAAGTGGGCGCGATCTCATCCCGGCTATGGTTTACGGAAGGGACGTTGGGGGGCTAGAGTTTGGGGGAATGTACTGTGCCATTTTAATGGTCAACTCATCTGTTGTATCGGCTGCAATGCTTCGAGTTTTCGGCCAAGAAATTGCAGAACTACCTTTAGTTGCAACCAGCAATGTAAATCGGGGAAAGGGTTATTTCCAAATATTGTTTTCCTGTATTGAGAGGCTACTTGCTTACTTACAAGTGAAGAACCTCGTCCTCCCGGCCGCCGAGGAAGCAGAATCCATTTGGACCGATAAATTCGCTTTCGAGAGAATCGAACCCGACCAGCTTAGCAATTACAGAAGAATTTGCTACCAAATGGTGATATTCAAAGGGACATCCATGCTTCAGAGAGCAATCCCATCGTGTCGAATTGTCAATACTCAATCATGA 2196 43.08 MRMVKRSASSKRLMTVRELFDTGFLEGVSVVYMGTRKGIDYGLRGTIKDGGILCTCLSCNGSKVITPSKFEIHACKQYKRAAQYICLENGTSLLDLLKACRGNAMHKLEATIQKVVNSSSEEENFTCRSCKGCFRASWVAQVGALCTSCAESNESESTPTPQTPPPSATNKRLRSPMPVKIKKSPKRTPVHISSQKSKSMIRTKTSKRDLTSMSSKSAPPRIRTQKRSSWKIKKRFSKPDFMLKSSKSTPKSITSQIKSQWKITTKRDQRLHKLVFEEGGLPEGTELAYFARGQKLLQGYKKGSGIFCFCCNCEVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKFSASDNDDVCIICLDGGNLLLCDGCPRAFHKECASLPSVPRGDWYCKFCENMYQRDKFVEYNENAVAAGRISGVDPIDDISKRCIRIVKNIESELSGCVLCRGSDFSKSGFGPWTIILCDQCEKEFHVGCLKEHKMAFLEELPKGKWFCGPDCTRIHSSLRKLLVHGEEKVPDSLRSVANRKLLEKGLGPGNDIDIRWRLISGKIASPDTRPLLSEAVAIFHDCFDPIIDITSGRDLIPAMVYGRDVGGLEFGGMYCAILMVNSSVVSAAMLRVFGQEIAELPLVATSNVNRGKGYFQILFSCIERLLAYLQVKNLVLPAAEEAESIWTDKFAFERIEPDQLSNYRRICYQMVIFKGTSMLQRAIPSCRIVNTQS 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52092421 52099451 + Bma020543.1 Bma04g01614 81983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01614 731 MobiDBLite consensus disorder prediction 190 224 - -
Bma04g01614 731 SUPERFAMILY FYVE/PHD zinc finger 447 510 IPR011011 -
Bma04g01614 731 Pfam Tify domain binding domain 299 349 IPR032308 -
Bma04g01614 731 Pfam Tify domain binding domain 45 100 IPR032308 -
Bma04g01614 731 ProSiteProfiles Zinc finger PHD-type profile. 363 408 IPR019787 -
Bma04g01614 731 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 727 - -
Bma04g01614 731 ProSitePatterns Zinc finger PHD-type signature. 366 405 IPR019786 -
Bma04g01614 731 MobiDBLite consensus disorder prediction 153 229 - -
Bma04g01614 731 SUPERFAMILY FYVE/PHD zinc finger 358 408 IPR011011 -
Bma04g01614 731 SMART PHD_3 365 406 IPR001965 -
Bma04g01614 731 SMART PHD_3 453 510 IPR001965 -
Bma04g01614 731 CDD PHD1_AIRE 366 405 - -
Bma04g01614 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 512 IPR013083 -
Bma04g01614 731 Pfam PHD-finger 366 407 IPR019787 -
Bma04g01614 731 PANTHER AUTOIMMUNE REGULATOR 1 727 - -
Bma04g01614 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 433 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01614 - - - cpep:111800114 1043.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01614 Bma-Chr4:52092421 Bma10g00055 Bma-Chr10:559346 0 dispersed
Bma14g00245 Bma-Chr14:2934867 Bma04g01614 Bma-Chr4:52092421 3.75E-34 transposed
Bma10g00053 Bma-Chr10:548125 Bma04g01614 Bma-Chr4:52092421 3.63E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01614 . 15 728 PHD Transcription Factor Family AT2G36720 54.3 1.4e-227 786.6
Bma14g00490 . 306 445 PHD Transcription Factor Family AT3G53680 52.5 8.0e-38 156.0
Bma08g00988 CCT,ECH 433 562 PHD Transcription Factor Family AT3G53680 53.1 3.4e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004207 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57265 PF16135 TDBD 2.10E-13 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01614 Bma_Chr04 FPKM 8.345406 8.74638 4.420669 5.071334 6.758238 6.893587 5.764373 1.433685 1.786966 1.601761