Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma04g01614 | ATGAGGATGGTGAAAAGGTCTGCATCGAGTAAGAGGTTAATGACAGTGAGGGAGCTATTTGATACTGGTTTTCTGGAAGGAGTATCTGTTGTATATATGGGTACCAGGAAGGGGATCGATTATGGTCTGCGTGGGACGATTAAAGATGGTGGGATTTTATGTACATGCCTGTCCTGTAATGGAAGCAAGGTTATTACTCCATCCAAATTTGAGATTCATGCTTGCAAACAATACAAACGAGCAGCACAGTATATATGCCTCGAAAATGGTACGAGCCTATTAGACTTGCTGAAGGCATGCAGGGGAAACGCCATGCATAAACTGGAGGCAACGATTCAAAAGGTGGTCAATTCTTCATCGGAAGAGGAAAATTTCACTTGCAGAAGTTGTAAAGGATGCTTTCGTGCATCATGGGTGGCGCAAGTTGGAGCTTTATGCACTTCATGTGCAGAGTCAAACGAATCAGAGTCCACCCCTACCCCACAAACGCCACCACCTTCTGCAACTAATAAGAGGCTCAGGTCACCAATGCCAGTCAAGATCAAAAAGTCTCCTAAAAGAACTCCAGTGCACATCTCTTCACAAAAAAGTAAATCAATGATAAGAACAAAGACATCAAAGCGAGATCTGACCTCAATGTCCTCAAAGAGTGCTCCACCGCGTATCCGAACACAAAAAAGGAGCTCTTGGAAGATCAAAAAAAGGTTTTCAAAGCCAGATTTCATGTTGAAATCCTCAAAAAGCACTCCAAAGTCCATTACTTCACAAATCAAAAGTCAATGGAAGATAACAACAAAGAGAGATCAACGGTTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGAAGGAACTGAATTAGCATATTTTGCTCGGGGACAGAAATTGCTCCAAGGTTACAAGAAGGGTTCGGGAATTTTTTGCTTTTGCTGCAACTGTGAGGTTAGTCCTTCTCAATTTGAAGTTCATGCTGGTTGGTCGTCTCGGAAAAAACCCTATGCGTACATTTATACGTCAAATGGGGTGTCTCTCCATGAATTAGCAATCTCCCTCTCAAAAGGCCGAAAATTTTCCGCCAGTGATAATGATGATGTATGCATTATATGTCTAGATGGAGGGAATCTTCTACTCTGTGATGGTTGCCCAAGGGCTTTCCACAAAGAATGTGCATCTCTACCGAGTGTTCCTCGTGGTGATTGGTATTGTAAATTTTGCGAGAATATGTACCAAAGAGATAAATTTGTAGAGTACAATGAAAATGCTGTTGCTGCGGGAAGGATTTCTGGAGTTGATCCCATAGATGATATATCCAAAAGATGTATTCGAATAGTAAAAAATATCGAAAGTGAACTTAGTGGATGTGTGTTATGCCGAGGGTCGGATTTTAGCAAATCCGGATTTGGTCCTTGGACAATTATACTTTGTGATCAGTGTGAGAAGGAATTTCATGTTGGCTGTTTGAAGGAGCATAAAATGGCGTTTCTTGAGGAACTACCAAAAGGGAAGTGGTTTTGTGGGCCAGATTGCACTAGGATACATTCTTCTCTGCGGAAGCTGCTCGTCCACGGGGAAGAGAAGGTTCCGGATTCCCTCCGAAGTGTTGCCAACAGGAAGTTATTGGAAAAAGGCTTAGGTCCTGGAAATGATATCGATATCAGATGGCGGCTTATCAGTGGAAAAATTGCTTCGCCCGATACTAGGCCTCTACTCTCAGAAGCTGTTGCAATCTTCCACGATTGCTTTGATCCGATAATTGATATAACAAGTGGGCGCGATCTCATCCCGGCTATGGTTTACGGAAGGGACGTTGGGGGGCTAGAGTTTGGGGGAATGTACTGTGCCATTTTAATGGTCAACTCATCTGTTGTATCGGCTGCAATGCTTCGAGTTTTCGGCCAAGAAATTGCAGAACTACCTTTAGTTGCAACCAGCAATGTAAATCGGGGAAAGGGTTATTTCCAAATATTGTTTTCCTGTATTGAGAGGCTACTTGCTTACTTACAAGTGAAGAACCTCGTCCTCCCGGCCGCCGAGGAAGCAGAATCCATTTGGACCGATAAATTCGCTTTCGAGAGAATCGAACCCGACCAGCTTAGCAATTACAGAAGAATTTGCTACCAAATGGTGATATTCAAAGGGACATCCATGCTTCAGAGAGCAATCCCATCGTGTCGAATTGTCAATACTCAATCATGA | 2196 | 43.08 | MRMVKRSASSKRLMTVRELFDTGFLEGVSVVYMGTRKGIDYGLRGTIKDGGILCTCLSCNGSKVITPSKFEIHACKQYKRAAQYICLENGTSLLDLLKACRGNAMHKLEATIQKVVNSSSEEENFTCRSCKGCFRASWVAQVGALCTSCAESNESESTPTPQTPPPSATNKRLRSPMPVKIKKSPKRTPVHISSQKSKSMIRTKTSKRDLTSMSSKSAPPRIRTQKRSSWKIKKRFSKPDFMLKSSKSTPKSITSQIKSQWKITTKRDQRLHKLVFEEGGLPEGTELAYFARGQKLLQGYKKGSGIFCFCCNCEVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKFSASDNDDVCIICLDGGNLLLCDGCPRAFHKECASLPSVPRGDWYCKFCENMYQRDKFVEYNENAVAAGRISGVDPIDDISKRCIRIVKNIESELSGCVLCRGSDFSKSGFGPWTIILCDQCEKEFHVGCLKEHKMAFLEELPKGKWFCGPDCTRIHSSLRKLLVHGEEKVPDSLRSVANRKLLEKGLGPGNDIDIRWRLISGKIASPDTRPLLSEAVAIFHDCFDPIIDITSGRDLIPAMVYGRDVGGLEFGGMYCAILMVNSSVVSAAMLRVFGQEIAELPLVATSNVNRGKGYFQILFSCIERLLAYLQVKNLVLPAAEEAESIWTDKFAFERIEPDQLSNYRRICYQMVIFKGTSMLQRAIPSCRIVNTQS | 731 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 52092421 | 52099451 | + | Bma020543.1 | Bma04g01614 | 81983 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma04g01614 | 731 | MobiDBLite | consensus disorder prediction | 190 | 224 | - | - | |
| Bma04g01614 | 731 | SUPERFAMILY | FYVE/PHD zinc finger | 447 | 510 | IPR011011 | - | |
| Bma04g01614 | 731 | Pfam | Tify domain binding domain | 299 | 349 | IPR032308 | - | |
| Bma04g01614 | 731 | Pfam | Tify domain binding domain | 45 | 100 | IPR032308 | - | |
| Bma04g01614 | 731 | ProSiteProfiles | Zinc finger PHD-type profile. | 363 | 408 | IPR019787 | - | |
| Bma04g01614 | 731 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 1 | 727 | - | - | |
| Bma04g01614 | 731 | ProSitePatterns | Zinc finger PHD-type signature. | 366 | 405 | IPR019786 | - | |
| Bma04g01614 | 731 | MobiDBLite | consensus disorder prediction | 153 | 229 | - | - | |
| Bma04g01614 | 731 | SUPERFAMILY | FYVE/PHD zinc finger | 358 | 408 | IPR011011 | - | |
| Bma04g01614 | 731 | SMART | PHD_3 | 365 | 406 | IPR001965 | - | |
| Bma04g01614 | 731 | SMART | PHD_3 | 453 | 510 | IPR001965 | - | |
| Bma04g01614 | 731 | CDD | PHD1_AIRE | 366 | 405 | - | - | |
| Bma04g01614 | 731 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 450 | 512 | IPR013083 | - | |
| Bma04g01614 | 731 | Pfam | PHD-finger | 366 | 407 | IPR019787 | - | |
| Bma04g01614 | 731 | PANTHER | AUTOIMMUNE REGULATOR | 1 | 727 | - | - | |
| Bma04g01614 | 731 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 352 | 433 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma04g01614 | Bma-Chr4:52092421 | Bma10g00055 | Bma-Chr10:559346 | 0 | dispersed | |
| Bma14g00245 | Bma-Chr14:2934867 | Bma04g01614 | Bma-Chr4:52092421 | 3.75E-34 | transposed | |
| Bma10g00053 | Bma-Chr10:548125 | Bma04g01614 | Bma-Chr4:52092421 | 3.63E-15 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 57265 | PF16135 | TDBD | 2.10E-13 | No_clan | Bma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma04g01614 | - | - | cpep:111800114 | 1043.88 |