Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01624 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGAAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTTTCTTCATCAGCTCCGACTGGCAACCCTGAGGTTCAAAGAGGCGAGGAGGGTGCGGAGAAGGAGAAAGGAGGAGAAATGGAGAGCCGGGAACCGAAGGTAGACGGCGGCGTAGGTGGCAGCGGAGAGAAGCCGGAGACCGTTCCGTTAGTTGGGTTCGGAGAACTCTTCAGATTCGCCGACGGTTTAGATTACTTTTTGATGGCACTTGGTTCCGCCGGAGCCGTCGTTCACGGTTGTTCTTTGCCTCTGTTTCTCCGGTTCTTCGCCGATCTTGTCAACTCTTTTGGGTCGAATGCTAACAATCTGGACAAGATGACGCAGGAAGTTTTGAAGTATGCATTTTACTTTCTGGTCGTCGGAGCTGCCATATGGGCATCTTCCTGGGCAGAGATTTCGTGTTGGATGTGGACTGGTGAGAGGCAATCGACGAAGATGAGGATCAAATACCTCGAAGCTGCGTTAAACCAAGACATTCAGTTCTTCGACACAGAAGTTCGAACCTCCGATGTTGTTTCCGCCATTAATACTGATGCAGTGATGGTCCAAGACGCCATTAGCGAGAAGTTGGGTAATTTTATTCACTATATGGCAACTTTTGTGTCTGGTTTTGTGGTGGGTTTTACTGCTGCTTGGCAATTAGCTTTGGTCACTCTGGCCGTAGTTCCTCTCATCGCCGTAATCGGAGCTATCCACGCCACCACATTGGCCAAGCTCTCCGCCAAGAGCCAAGAGGCTCTTTCTCAAGCCGGAAACATCGTAGAACAGACAATAGTTCAAATTCGGGTCGTTTTGGCGTTCGTCGGAGAATCAAGAGCCTTACAAAGTTACTCGGCTGCTCTCAAGGTTTCTCAGAGACTAGGCTACAGAAGTGGATTTGCAAAAGGGTTGGGTCTTGGCGCAACTTACTTTGTCGTCTTCTGCTGCTACGCCCTTCTTCTCTGGTACGGCGGCTATCTGGTCAGGCACCACCACACCAACGGCGGCCTAGCCATAGCCACCATGTTTGCCGTCATGATAGGTGGACTGGCTTTAGGCCAATCCATTCCAAGCATGACTGCATTTGCCAAAGCAAAAGTTGCTGCTGCTAAAATTCTTCGCATAATCGATCACAAACCGGCAGTCAATCGAAACAGCGAATCTGGTTTGGAATTAGATTCTGTAACAGGACTAGTCGAGCTTAAAAACATAGATTTCTCGTATCCGTCAAGACCAGACGTACGAATACTCAACGACTTCTCCCTCAACGTTCCGGCTGGCAAGACCATAGCTTTGGTCGGTAGCAGCGGTTCCGGGAAGAGCACCGTAGTCTCACTTATTGAAAGATTTTACGACCCGATTTCAGGATGCGTTCTTCTCGACGGCCACAATATAAAGACGTTAAAGCTTAGATGGCTGAGGCAGCAAATCGGGTTGGTCAGTCAAGAGCCGGCTCTGTTTGCGACCACCATTAAAGAGAATATACTCTTGGGAAGGCCCGAGGCAAACCAGCTCGAGGTAGAAGAAGCTGCAAGAGTTGCCAATGCCCATTCTTTCATCATCAAACTTCCTGATGGCTATGATACTCAGGTGGGGGAGAGAGGCTTGCAGCTTTCCGGAGGGCAGAAGCAGAGAATCGCTATAGCCCGGGCGATGCTGAAAAACCCTGCTATCTTGCTCTTAGACGAGGCGACCAGTGCCCTTGACTCCGAATCGGAAAAGCTCGTTCAAGAGGCCCTCGATCGGTTCATGATCGGGAGGACAAGTCTCGTGATTGCCCATCGCCTCTCGACCATTCGCAAAGCCGATCTCGTTGCCGTTCTCCAACAAGGAAGCGTCTCTGAAATCGGGACGCACGATGAACTCATCGCCAGAGGAGAAAACAGCACCTACGCCAAACTCATCCGAATGCAGGAGATGGCTCACGAAACCGCTCTCAACAACGCTCGTAAAAGTAGTGCAAGACCTTCCAGTGCGAGAAACTCGGTGAGTTCACCTATAATTGCACGAAATTCGTCATATGGGCGATCGCCTTATTCACGTCGGCTATCGGACTTCTCCACTTCCGATTTTAGTCTCTCCCTTGACATCTCTCACCCGAGCTATCGGGCCGAAAAGCTTGCGTTCAAGGAGCAAGCCAGCTCCTTCTGGCGCCTTGCGAAAATGAATTCTCCTGAATGGGTTTACGCACTGCTCGGTTCGATCGGCTCCATCGTTTGTGGGTTTTTAAGCGCCTTCTTTGCATATGTTCTTAGTGCTGTTCTAAGTGTCTACTACAATCCTAGCCATACTTACATGAGTAGAGAAATAGAGAAGTACTGCTATTTACTGATTGGGCTCTCATCAGCAGCTCTGCTCTTCAACACACAGCAGCATTTCTTCTGGGATATTGTCGGAGAAAATCTCACTACTCGAGTGAGGGAGAAAATGCTCGGGGCTGTGCTAAAAAATGAAATGGCCTGGTTCGATCAGGAGGAAAATGAGAGCGCTAGAATTGCAGCTAGGTTGGCTCTAGATGCGAACAATGTCAGATCCGCCATTGGAGATCGGATTTCTGTGATTGTTCAGAACACAGCTCTCATGTTAGTTGCCTGCACTGCTGGATTTGTGCTGCAATGGCGTCTGGCTCTCGTCCTCGTGGCTGTCTTCCCTGTGGTTGTTGCAGCCACCGTTTTGCAGAAAATGTTTATGACTGGTTTTTCGGGAGATCTTGAAGCATCTCATGCGAAGGCGACTCAATTGGCGGGAGAGGCGATAGCCAACGTAAGGACAGTGGCAGCCTTCAATTCCGAGGGGAAAATCGTCGGTCTTTTCTCCTCAAACCTTGAGATTCCTCTAAAGCGCTGCTTTTGGAAAGGACAGATTGCCGGAAGTGGATTCGGCGTGGCCCAGTTTTTGCTCTATGCTTCGTATGCTCTTGGTCTTTGGTATGCTTCTTGGCTCGTAAAGCATGGAATATCAGATTTCTCGAACACAATTCGGGTTTTCATGGTCCTCATGGTCTCAGCCAACGGTGCAGCCGAAACACTCACCTTAGCTCCCGACTTCATCAAGGGCGGTCGAGCCATGCGCTCGGTCTTCGACCTTCTCGACCGAAAAACCGAGATTGAACCCGACGATCTAAATGCCACACCAGTCCAAGACCGATTACGAGGCGAAGTCGAATTCAAACACGTCGACTTTTCTTACCCGAGTCGATCTGACGTCCCGATTTTCCGCGACCTCACTCTCCGGGCTCGTTCGGGCAAGACTCTTGCCCTAGTTGGGCCAAGCGGGTGCGGTAAAAGCTCGGTAATTGCACTAATCCAGAGGTTCTACGAGCCGACATCTGGACGAGTCATGATCGACGGGAAAGATATCAGAAAATACAATCTCAAGTCCCTCAGACAGCACATTGCAATAGTTCCTCAGGAGCCATGCCTGTTTGCCTCGACCATCTACGAAAACATTGCTTATGGCCGGGAATCAGCCACCGAAACAGAGATAATTGAAGCAGCCACACTGGCCAACGCCCATAAGTTCATATCATCATTGCCTGATGGGTACAAAACATTTGTAGGGGAAAGAGGTATTCAACTATCAGGTGGGCAGAAACAAAGGATCGCCATTGCTAGAGCTCTGGTCAGGAAGGCAGAGCTGATGCTACTTGACGAAGCAACCAGTTCATTAGATGCCGAATCCGAGCGATCAGTCCAGGAAGCTCTCGACCGGGCATGCTCGGGAAAAACAACCATAGTCGTGGCTCATCGACTCTCGACCATCAGAAATGCTCATGTTATTGCTGTGATCGATGAAGGAAAAGTGGCCGAGCAGGGGTCGCATTCGCATCTTTTGAAAAATCATCCGGACGGGTGTTACGCTCGGATGATTCAGCTACAAAGATTTACGCATAACCAAGTCATCGGGATTGCTTCGGGCTCGACATCCTCGGCCAAACCCAGTCGGGAGGAAGACAATTAA 4011 49.86 MSQDSEEIKTIEKWKWSEMQGLELVSSSAPTGNPEVQRGEEGAEKEKGGEMESREPKVDGGVGGSGEKPETVPLVGFGELFRFADGLDYFLMALGSAGAVVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAAWQLALVTLAVVPLIAVIGAIHATTLAKLSAKSQEALSQAGNIVEQTIVQIRVVLAFVGESRALQSYSAALKVSQRLGYRSGFAKGLGLGATYFVVFCCYALLLWYGGYLVRHHHTNGGLAIATMFAVMIGGLALGQSIPSMTAFAKAKVAAAKILRIIDHKPAVNRNSESGLELDSVTGLVELKNIDFSYPSRPDVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGCVLLDGHNIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEANQLEVEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTSLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIARGENSTYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDISHPSYRAEKLAFKEQASSFWRLAKMNSPEWVYALLGSIGSIVCGFLSAFFAYVLSAVLSVYYNPSHTYMSREIEKYCYLLIGLSSAALLFNTQQHFFWDIVGENLTTRVREKMLGAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEASHAKATQLAGEAIANVRTVAAFNSEGKIVGLFSSNLEIPLKRCFWKGQIAGSGFGVAQFLLYASYALGLWYASWLVKHGISDFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDLNATPVQDRLRGEVEFKHVDFSYPSRSDVPIFRDLTLRARSGKTLALVGPSGCGKSSVIALIQRFYEPTSGRVMIDGKDIRKYNLKSLRQHIAIVPQEPCLFASTIYENIAYGRESATETEIIEAATLANAHKFISSLPDGYKTFVGERGIQLSGGQKQRIAIARALVRKAELMLLDEATSSLDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDEGKVAEQGSHSHLLKNHPDGCYARMIQLQRFTHNQVIGIASGSTSSAKPSREEDN 1336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52180902 52185811 - Bma020554.1 Bma04g01624 81993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01624 1336 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 92 1314 IPR039421 -
Bma04g01624 1336 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 748 1035 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma04g01624 1336 CDD ABC_MTABC3_MDL1_MDL2 1071 1310 - -
Bma04g01624 1336 CDD ABC_6TM_Pgp_ABCB1_D1_like 92 377 - -
Bma04g01624 1336 CDD ABC_MTABC3_MDL1_MDL2 416 655 - -
Bma04g01624 1336 Gene3D - 1062 1317 IPR027417 -
Bma04g01624 1336 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 92 1314 - -
Bma04g01624 1336 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 93 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma04g01624 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 416 652 IPR003439 GO:0005524
Bma04g01624 1336 SUPERFAMILY ABC transporter transmembrane region 80 397 IPR036640 GO:0005524|GO:0016021
Bma04g01624 1336 CDD ABC_6TM_Pgp_ABCB1_D2_like 737 1053 - -
Bma04g01624 1336 Pfam ABC transporter 434 583 IPR003439 GO:0005524
Bma04g01624 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 655 IPR027417 -
Bma04g01624 1336 SMART AAA_5 1098 1290 IPR003593 -
Bma04g01624 1336 SMART AAA_5 443 629 IPR003593 -
Bma04g01624 1336 Gene3D ABC transporter type 1, transmembrane domain 139 1044 IPR036640 GO:0005524|GO:0016021
Bma04g01624 1336 MobiDBLite consensus disorder prediction 24 70 - -
Bma04g01624 1336 Pfam ABC transporter 1090 1238 IPR003439 GO:0005524
Bma04g01624 1336 ProSitePatterns ABC transporters family signature. 1210 1224 IPR017871 GO:0005524
Bma04g01624 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1071 1307 IPR003439 GO:0005524
Bma04g01624 1336 Gene3D - 414 679 IPR027417 -
Bma04g01624 1336 ProSitePatterns ABC transporters family signature. 555 569 IPR017871 GO:0005524
Bma04g01624 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1064 1310 IPR027417 -
Bma04g01624 1336 MobiDBLite consensus disorder prediction 38 57 - -
Bma04g01624 1336 SUPERFAMILY ABC transporter transmembrane region 735 1055 IPR036640 GO:0005524|GO:0016021
Bma04g01624 1336 Pfam ABC transporter transmembrane region 750 1018 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bma04g01624 1336 Pfam ABC transporter transmembrane region 98 366 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02378 Bma-Chr1:81405532 Bma04g01624 Bma-Chr4:52180902 4.56E-133 dispersed
Bma02g00414 Bma-Chr2:6328869 Bma04g01624 Bma-Chr4:52180902 7.61E-116 dispersed
Bma04g01624 Bma-Chr4:52180902 Bma14g00163 Bma-Chr14:2185239 0 dispersed
Bma08g00346 Bma-Chr8:6220501 Bma04g01624 Bma-Chr4:52180902 1.34E-74 dispersed
Bma14g01839 Bma-Chr14:39345210 Bma04g01624 Bma-Chr4:52180902 7.75E-127 dispersed
Bma15g00310 Bma-Chr15:2993939 Bma04g01624 Bma-Chr4:52180902 6.76E-101 dispersed
Bma04g01624 Bma-Chr4:52180902 Bma13g00320 Bma-Chr13:5801115 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01624 K05658 - jre:109021322 2258.03