Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01643 TGGAGTGATAAGAAGGAAATGGGAGGGAAGGGAAATTGGTTTTCTTCTGTAAAGAAAGCTCTCAGCCCTGAGGCCAAAGAGAAGAAAGATCAGTTGCAATTATTCCAGAATTCCAAATCGAAGAAGAAATGGTTCGGAGCAAGAAGGGCATTGCGGGCTTTAAGAGGATTGGTGAGGCTTAAAACATTGATGGAAGGTTCGGTTGTGAAACGGCAAGCTGCAAATACTCTTCGATGCATGCAAACCCTTTCGCGAGTTCAGTCTCAAATTCGTTTCAGGAGGATCCGGATGCTAGAAGAGAATCAAGCTCTTCAAAAACAACTTCTACAAAAACACGCTAAAGAGCTGGAGAATTTTCGGATGGGGGAGGAATGGGATGACAGCCTGCAGTCAAAGGAGCAAATTGAAGCTAATCTACTAAGCAAATATGAGGCTGCTATGAGAAGAGAGAGAGCATTGGCTTATTCATTCTCCCATCAGCAAACCTGGAAAAATTCTTCAAGATCTGTAAATCCAATGTTTATGGATCCAAGCAATCCCACCTGGGGTTGGAGCTGGTTAGAACGATGGACGGCAGCCCGGCCATGGGAAAGTCGGGAAGAAAAGGAGCAGAATAACGAGAACTCATCTGTAAAGAGCGTAAGGCGTGGCATTTCTCCAGGAGAGATAAGCAAGTCTTATACAAAATACCAACTAAATGCTGAAGCAAACTCCCCGACGGCTAGTGTAAAGGCAAACAATTCAACTTTCGAGTCCCCTTTGACTCCTTCCAAGCCTGCATTGCCTGTATCAACTAGAAAAATGAAGCCCCCCAGCCCCAGAAGTTGCTTGGGTCTAGAAGATGACTCGAAGAGCATAGCTAGTTTGCAGTCAGAACGTGTTCGGAGGCATAGCATGGGTGCGGGATCAGTGAGGGACGATGAGAGCATAGCTAGCTCTTCGGCAGTGCCTAGCTACATGACCCCAACTGAATCTGCAAGAGCCAAATCCAAATCGCAAAGCCCTTTCGCAATGGAGAAGGCCGAAACAGTAGAAAAAGTATCACCAATCCCCACTAAGAAGCGACTTTCATTTACGACTTCTGCCGCCCTACCAAGGCGGCACTCGGGTCCGCCGAAGATCGAAAGCAGCTTCAACGCAGAAGCCCAATTAAGCAATGGTGTAAGTGCATAA 1173 46.63 WSDKKEMGGKGNWFSSVKKALSPEAKEKKDQLQLFQNSKSKKKWFGARRALRALRGLVRLKTLMEGSVVKRQAANTLRCMQTLSRVQSQIRFRRIRMLEENQALQKQLLQKHAKELENFRMGEEWDDSLQSKEQIEANLLSKYEAAMRRERALAYSFSHQQTWKNSSRSVNPMFMDPSNPTWGWSWLERWTAARPWESREEKEQNNENSSVKSVRRGISPGEISKSYTKYQLNAEANSPTASVKANNSTFESPLTPSKPALPVSTRKMKPPSPRSCLGLEDDSKSIASLQSERVRRHSMGAGSVRDDESIASSSAVPSYMTPTESARAKSKSQSPFAMEKAETVEKVSPIPTKKRLSFTTSAALPRRHSGPPKIESSFNAEAQLSNGVSA 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52333556 52335703 + Bma020575.1 Bma04g01643 82012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01643 390 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 47 383 - -
Bma04g01643 390 MobiDBLite consensus disorder prediction 293 390 - -
Bma04g01643 390 MobiDBLite consensus disorder prediction 236 259 - -
Bma04g01643 390 MobiDBLite consensus disorder prediction 195 217 - -
Bma04g01643 390 PANTHER IQ-DOMAIN 5-RELATED 47 383 - -
Bma04g01643 390 MobiDBLite consensus disorder prediction 307 332 - -
Bma04g01643 390 MobiDBLite consensus disorder prediction 195 209 - -
Bma04g01643 390 MobiDBLite consensus disorder prediction 236 280 - -
Bma04g01643 390 MobiDBLite consensus disorder prediction 376 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01643 - - - cpap:110826041 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01643 Bma-Chr4:52333556 Bma07g01423 Bma-Chr7:50036173 6.08E-37 dispersed
Bma03g00009 Bma-Chr3:154979 Bma04g01643 Bma-Chr4:52333556 6.76E-23 transposed
Bma06g00330 Bma-Chr6:6805939 Bma04g01643 Bma-Chr4:52333556 3.39E-11 transposed
Bma08g00947 Bma-Chr8:48453472 Bma04g01643 Bma-Chr4:52333556 2.43E-118 transposed
Bma08g01144 Bma-Chr8:50511458 Bma04g01643 Bma-Chr4:52333556 7.89E-76 transposed
Bma14g02008 Bma-Chr14:43499126 Bma04g01643 Bma-Chr4:52333556 7.89E-15 transposed
Bma10g00020 Bma-Chr10:311338 Bma04g01643 Bma-Chr4:52333556 9.62E-08 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006173 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g01643 Bma_Chr04 FPKM 6.756431 7.334967 9.998434 10.218827 8.25808 7.970819 8.58884 7.076812 8.486583 8.838194