Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01647 ATGTATGGCCCGCAGGGAGAGATCTTCGGCATTGAACATGATAACGCTGGTTTTACCGTGAACGGGAAACTATTGGACCTGTACTTTCCCCATACTCTGTTCACGGTTGAAAATAGCTGGCTCGATCTCATTTCTCAGCTCATTTCCTTCTTTTCTTCTCCAACGGGACGAACATTTTCTTCTCAGGTCAAGGAAGGTGATGATGGCATCTTTATTTTGCCCATTGATTTCCAACAATTTCGGAAAATATATGATATTCCTATATTTTATACAATGTTGGAGGATGCACCTAAAATTGCCCTTATATGTATGTCTGCCGCACTTCACCAGCAGGTTTTGTTGATGGAAAGAGAAAACAAGTTAGAAGTTGTTGCAAGAATTATAATCAGGCCACACAATTGCCCTGAATCTATGCTCTCTCTTAAGAACTTAAAGGCAGCTTATATTGATAAGTTTGCATCTGTTCGTGGTACTGTGGTTAAAGTTAGCACTGTCAGGCCTCTAGTAGTACAAATGACTTTCTCCTGCTCAAAGTGTAAAACCAACATTACACGTAACTTTCCTGATGGAAAGTTTTCACCTCCATCAATTTGTGAGTTGGATGGATGCAAAAGTAAAACATTTAATCCAATTCGATCTACTTCTCAAGCTATAGATTTTCAGAAAATAAGACTACAGGAACTTCTAAAGTCAGAAGATCACGAAGAAGGCAGGGTGCCACGAACAGTAGAGTGTGAACTGACTGAAGATCTTGTTGATGCATGCATCCCTGGAGATGTGGTGACTGTTACTGGCATTATAAGAGTAATTAACAACTACATGGATGTTGGAGGAGGAAAATTGAAAGGCAAAAATCAGGGATTCTTCTACTTGTATGTTGAAGCCATTTCAATTAAAAATTCCAAATTACAATCTGCACATGAGAATGTAGAAGATTCTAATTTAGATGCCAGAACAACAGAGCTACCTGATTTATACACATTCTCTCCAGCATTTTTTGTCGATATCCCAGGTGATCCTGGACTAGGCAAAAGCCAGTTACTGAAAGCCGCTGCTGGTGTTTCTCCACGTGGTATTTATGTTTGTGGCAATGCCACAACAAAAGCAGGCCTGACTGTAGCCGTTGTGAAGGATCCTACAACAAGTGATTATGCATTTGAAGCTGGTAGATGCGCTTTATTGGAAGCCATGGAACAACAATGCGTCTCTATTGCAAAGGCAGGACTGGTAGCAAGTTTATCAGCACGCACTTCTGTCTTAGCAGCTGCAAACCCTGTTGGAGGTCATTATAACCGTGCAAAAACCGTGAACGAAAATTTGAAGATGAGTTCTGCTCTTCTCACGCGATTTGATTTGGTTTTCATCCTGCTCGATAAACCTAATGAGCTTATGGATAAACAAGTTTCGGATCATATTATGTCTGTAAGTTACGATATATATGTTAAGAAAAATATAAAGTTTAAGTTTTTGGAATATTTGGTAATTTATCTATATAAATGCCTTTTTATGTGTGTGAAAAGTAGGTTGTCTCTGCTCCATATGCCTACCCATTTAGAAAGTCCAGCTGTAGATAATGCTGGATGCATAGTTACAAGAGCGTCAGGGGGCTCCTTTGTTTCAAGGCTGAAACGAGATACAACAAAAGACGGTGATTTTGTTCCATTACCTGGCCAACTTCTACGCAAATATATAACTTATGCAAGAACCTTTGTCTTTCCTAGGATGTCAAAGCCGGCTGCAGATATCCTGCAGAAGTTTTATTTACGATTGAGAGATCAGAATACATCCGCAGATAGTACACCAATTACTGCTCGACAACTGGAAAGTTTGGTGAGGCTGGCAGAAGCTCGAGCCAGGATTGACTTGAGAGAAGAGATAACAGCCCAAGATGCCATGGATGTGGTTGAAATTATGAAAGAATCCCTCTACGACAAGTATGTAGATGAGCATGGCGTTGTAGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCTAAACGGTTTTTGAGTGCCCTAAATAAGCAGTCAGAATTACAACAAAAAGATTGTTTTACAATTTCTGAAATTTACAGTTTGGCAGATAGGATTTGTCTAAGAGTTCCTGATATTGACACATTTGTTGATAATCTCAACAGTGTTGGTTATCTCCTTAAGAAAGGGCCAAAGACATACCAGGTACGACGGAAAGAAAGAGTAAGAATTTTCACATATGCATGGCTTTTTAGATAA 2235 39.6 MYGPQGEIFGIEHDNAGFTVNGKLLDLYFPHTLFTVENSWLDLISQLISFFSSPTGRTFSSQVKEGDDGIFILPIDFQQFRKIYDIPIFYTMLEDAPKIALICMSAALHQQVLLMERENKLEVVARIIIRPHNCPESMLSLKNLKAAYIDKFASVRGTVVKVSTVRPLVVQMTFSCSKCKTNITRNFPDGKFSPPSICELDGCKSKTFNPIRSTSQAIDFQKIRLQELLKSEDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDVGGGKLKGKNQGFFYLYVEAISIKNSKLQSAHENVEDSNLDARTTELPDLYTFSPAFFVDIPGDPGLGKSQLLKAAAGVSPRGIYVCGNATTKAGLTVAVVKDPTTSDYAFEAGRCALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSSALLTRFDLVFILLDKPNELMDKQVSDHIMSVSYDIYVKKNIKFKFLEYLVIYLYKCLFMCVKSRLSLLHMPTHLESPAVDNAGCIVTRASGGSFVSRLKRDTTKDGDFVPLPGQLLRKYITYARTFVFPRMSKPAADILQKFYLRLRDQNTSADSTPITARQLESLVRLAEARARIDLREEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFTISEIYSLADRICLRVPDIDTFVDNLNSVGYLLKKGPKTYQVRRKERVRIFTYAWLFR 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52347896 52354381 + Bma020579.1 Bma04g01647 82016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01647 744 Gene3D - 334 648 IPR027417 -
Bma04g01647 744 Pfam MCM P-loop domain 336 389 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 Pfam MCM P-loop domain 391 475 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 PANTHER DNA HELICASE MCM8 338 729 - -
Bma04g01647 744 PANTHER DNA HELICASE MCM8 20 312 - -
Bma04g01647 744 SMART mcm 137 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 338 729 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 20 312 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 Pfam MCM OB domain 141 270 IPR033762 -
Bma04g01647 744 Gene3D - 168 218 - -
Bma04g01647 744 PRINTS Mini-chromosome maintenance (MCM) protein family signature 395 408 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 PRINTS Mini-chromosome maintenance (MCM) protein family signature 446 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 PRINTS Mini-chromosome maintenance (MCM) protein family signature 329 344 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 PRINTS Mini-chromosome maintenance (MCM) protein family signature 419 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 ProSiteProfiles MCM family domain profile. 334 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma04g01647 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 648 IPR027417 -
Bma04g01647 744 SUPERFAMILY Nucleic acid-binding proteins 69 271 IPR012340 -
Bma04g01647 744 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Bma04g01647 744 Gene3D - 141 271 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01647 Bma-Chr4:52347896 Bma07g01373 Bma-Chr7:49350150 1.04E-56 dispersed
Bma04g01647 Bma-Chr4:52347896 Bma03g00566 Bma-Chr3:4689080 1.52E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01647 K10737 - twl:119987122 879.011