Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01670 | ATGCGTCCTCCAAGAGGCGGCGGCGGCTTTAGGGGCGGACGAGATGGGGGCTTCGGTGGTCGCCGTGGCGGCGGTCGCTCCAGTGGTCGTGGCTTCGGTAGTGGCCGCGGCGGCGGTGGTTATCGCGACGAGGGTCCTCCCGCCGAGGTCATTGAGGTTTCCACATTTCTTCATGCCTGCGAGGGTGATGCAGTTACTAAGCTCACTAATGAGAAGATACCTTACTTTAATGCCCCAATATACCTTCAGAACAAGACACAGATCGGGAAAGTTGATGAAATTTTTGGTCCCATCAATGAATCCTACTTTTCAATCAAAATGATGGAAGGCATTGTGGCTACTTCATATGCCGCTGGTGATAAATTCTACATCGACCCAGCTAAACTTTTACCTCTAGCAAGATTTCTTACGCAACCAAAAGGACAGGGACAAATTGGTGGCAGAGGAGGCGGCCGTGGAGGGAGAGGTGGTTTTAGAGGCAGCAGCCGCGGTGGTGGCGGCGGTGGTTTTCGTGGAAGGGGAGGACCGAGGGGTGGCAGAGGTGGGCCACCGCGAGGGGGTGGGAAGGTGGAAGGGTTTTGGCTAAGCTATTGCCATTTGGCTCGCCCTTCCTCATTGCCCAGCCCTACGGATTTGCATCTCTTTAAGGACGGAATCCGTCCTCTGTGGGAGGATTCAGCCAATTGCAATGGTGGGAAGTGGATTATACGTTTCAAAAAGGTTGTGTCTGGTCGCTTTTGGGAGGATTTGGTTCTTGCCCTGGTCGGTGATCAACTTGACTACGGAGACAACATTTGTGGTGCTGTTCTGAGTGTTCGCTTCAATGAGGATATATTGAGCGTGTGGAACAGAAACGCATCTGATCATCAGGCAGTAATGGGTTTAAGAGATTCAATCAAACGACACCTAAAGCTTCCGCAAAGTTATGTTATGGAGTACAAGCCCCATGATGCTTCTCTACGTGACAATTCATCATACAGAAACACATGGTTGCGAGGTTAG | 1002 | 51.5 | MRPPRGGGGFRGGRDGGFGGRRGGGRSSGRGFGSGRGGGGYRDEGPPAEVIEVSTFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAAGDKFYIDPAKLLPLARFLTQPKGQGQIGGRGGGRGGRGGFRGSSRGGGGGGFRGRGGPRGGRGGPPRGGGKVEGFWLSYCHLARPSSLPSPTDLHLFKDGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSVRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPQSYVMEYKPHDASLRDNSSYRNTWLRG | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 52510223 | 52523272 | + | Bma020603.1 | Bma04g01670 | 82039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01670 | 333 | PANTHER | BNAA10G16710D PROTEIN | 189 | 333 | - | - | |
Bma04g01670 | 333 | SUPERFAMILY | Translation proteins | 52 | 125 | IPR009000 | - | |
Bma04g01670 | 333 | SUPERFAMILY | eIF4e-like | 190 | 329 | IPR023398 | - | |
Bma04g01670 | 333 | Pfam | Eukaryotic initiation factor 4E | 189 | 313 | IPR001040 | GO:0003723|GO:0003743|GO:0006413 | |
Bma04g01670 | 333 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 189 | 333 | IPR001040 | GO:0003723|GO:0003743|GO:0006413 | |
Bma04g01670 | 333 | Pfam | Gar1/Naf1 RNA binding region | 50 | 136 | IPR007504 | GO:0001522|GO:0042254 | |
Bma04g01670 | 333 | Gene3D | Probable tRNA pseudouridine synthase domain | 46 | 137 | IPR038664 | - | |
Bma04g01670 | 333 | MobiDBLite | consensus disorder prediction | 140 | 185 | - | - | |
Bma04g01670 | 333 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 211 | 234 | IPR019770 | GO:0003723|GO:0003743|GO:0005737|GO:0006413 | |
Bma04g01670 | 333 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Bma04g01670 | 333 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 188 | 331 | IPR023398 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g01670 | Bma-Chr4:52510223 | Bma05g01251 | Bma-Chr5:51846463 | 1.13E-23 | dispersed | |
Bma04g01670 | Bma-Chr4:52510223 | Bma01g01479 | Bma-Chr1:28350010 | 2.65E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01670 | K03259 | - | csv:101204290 | 298.516 |