Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01670 ATGCGTCCTCCAAGAGGCGGCGGCGGCTTTAGGGGCGGACGAGATGGGGGCTTCGGTGGTCGCCGTGGCGGCGGTCGCTCCAGTGGTCGTGGCTTCGGTAGTGGCCGCGGCGGCGGTGGTTATCGCGACGAGGGTCCTCCCGCCGAGGTCATTGAGGTTTCCACATTTCTTCATGCCTGCGAGGGTGATGCAGTTACTAAGCTCACTAATGAGAAGATACCTTACTTTAATGCCCCAATATACCTTCAGAACAAGACACAGATCGGGAAAGTTGATGAAATTTTTGGTCCCATCAATGAATCCTACTTTTCAATCAAAATGATGGAAGGCATTGTGGCTACTTCATATGCCGCTGGTGATAAATTCTACATCGACCCAGCTAAACTTTTACCTCTAGCAAGATTTCTTACGCAACCAAAAGGACAGGGACAAATTGGTGGCAGAGGAGGCGGCCGTGGAGGGAGAGGTGGTTTTAGAGGCAGCAGCCGCGGTGGTGGCGGCGGTGGTTTTCGTGGAAGGGGAGGACCGAGGGGTGGCAGAGGTGGGCCACCGCGAGGGGGTGGGAAGGTGGAAGGGTTTTGGCTAAGCTATTGCCATTTGGCTCGCCCTTCCTCATTGCCCAGCCCTACGGATTTGCATCTCTTTAAGGACGGAATCCGTCCTCTGTGGGAGGATTCAGCCAATTGCAATGGTGGGAAGTGGATTATACGTTTCAAAAAGGTTGTGTCTGGTCGCTTTTGGGAGGATTTGGTTCTTGCCCTGGTCGGTGATCAACTTGACTACGGAGACAACATTTGTGGTGCTGTTCTGAGTGTTCGCTTCAATGAGGATATATTGAGCGTGTGGAACAGAAACGCATCTGATCATCAGGCAGTAATGGGTTTAAGAGATTCAATCAAACGACACCTAAAGCTTCCGCAAAGTTATGTTATGGAGTACAAGCCCCATGATGCTTCTCTACGTGACAATTCATCATACAGAAACACATGGTTGCGAGGTTAG 1002 51.5 MRPPRGGGGFRGGRDGGFGGRRGGGRSSGRGFGSGRGGGGYRDEGPPAEVIEVSTFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYAAGDKFYIDPAKLLPLARFLTQPKGQGQIGGRGGGRGGRGGFRGSSRGGGGGGFRGRGGPRGGRGGPPRGGGKVEGFWLSYCHLARPSSLPSPTDLHLFKDGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSVRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPQSYVMEYKPHDASLRDNSSYRNTWLRG 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52510223 52523272 + Bma020603.1 Bma04g01670 82039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01670 333 PANTHER BNAA10G16710D PROTEIN 189 333 - -
Bma04g01670 333 SUPERFAMILY Translation proteins 52 125 IPR009000 -
Bma04g01670 333 SUPERFAMILY eIF4e-like 190 329 IPR023398 -
Bma04g01670 333 Pfam Eukaryotic initiation factor 4E 189 313 IPR001040 GO:0003723|GO:0003743|GO:0006413
Bma04g01670 333 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 189 333 IPR001040 GO:0003723|GO:0003743|GO:0006413
Bma04g01670 333 Pfam Gar1/Naf1 RNA binding region 50 136 IPR007504 GO:0001522|GO:0042254
Bma04g01670 333 Gene3D Probable tRNA pseudouridine synthase domain 46 137 IPR038664 -
Bma04g01670 333 MobiDBLite consensus disorder prediction 140 185 - -
Bma04g01670 333 ProSitePatterns Eukaryotic initiation factor 4E signature. 211 234 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Bma04g01670 333 MobiDBLite consensus disorder prediction 1 45 - -
Bma04g01670 333 Gene3D RNA Cap, Translation Initiation Factor Eif4e 188 331 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01670 Bma-Chr4:52510223 Bma05g01251 Bma-Chr5:51846463 1.13E-23 dispersed
Bma04g01670 Bma-Chr4:52510223 Bma01g01479 Bma-Chr1:28350010 2.65E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01670 K03259 - csv:101204290 298.516