Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01677 ATGAACGCTTTCAGCAATGCCTCATGCCCCAACTGCGGAGGCCCGGCTGCAATGGGTGAGATGTCGTTTGACGACCATCATTTAAGGATTGAAAATGTCCGACTACGAGAAGAGGTTGATGGAATGGCTCCTAAATACGTAGGCAGACCTTTTGCCTCGTACAACCACAGCCAATCTGACGTTGGAGTTGGTGATTTTGCTGGGAATTCAGGCTACGTGTACGGGGCAAACGAACTTGTCATGCCGATGTCCAGGCCAACGGAGGCTGATAAACCTGTGATCGTCGAGCTTGCTGTTGCAGCTATGGAAGAGCTAGTCAGCATGGCTGAAAAGGGACAGCCTTTGTGGATACCAGCTGGTGATAATGCCTCCGAGATACTGAATGAAGAAGAATATTTCAAGCTTTTCCCAAGAGAAATTTTCTCAAAACCTTTGGGCTTAAGAACTGAAGCTTCACGGCAATCCGCAGTCGTCATCATGAACCACATTAAGCTCATTGAGATTTTCATGGACGTGAATAAATGGTCAACTGTATTTTGTGGCATTGTTTCAAGAGCACTTCTCCTGGAAGTCCTATCAACTGGAGTTGCTGGAAACCGAAATGGAGCCCTACAAGTGATCACAGCTGAATTCCAGGTCCCTACGCCGCTAGTTCCGACCAGGGAAAATTACATGGTCAGGTACTGCAAGAAGCACGGAGATGGGACTTGGGCTATCGTCGACGTTTCGCTCGATACTTTACGCCCAACCTCTATGCCAAAGATCAGTCGAAGAAGACCATCTGGATGCTTGATCCAAGAACTTCCAAATGGCTTCTCCAAGGTGACGTGGGTCGAACACGTAGAAGAAGATATCAGAGCCGTTCATAATCTCTACCAATCACTTGTTAGTTCTGGGCTTGCTTTTGGAGCCACACGATGGGTGGCTACGTTAGATCGACAGTGCGAACGTCTCGCAAGCTCCATGGCCAACGACATCGCTGCTGGAGATTTACGCAGTAACCATCTTTTGTTTATTCTGTAA 1023 47.8 MNAFSNASCPNCGGPAAMGEMSFDDHHLRIENVRLREEVDGMAPKYVGRPFASYNHSQSDVGVGDFAGNSGYVYGANELVMPMSRPTEADKPVIVELAVAAMEELVSMAEKGQPLWIPAGDNASEILNEEEYFKLFPREIFSKPLGLRTEASRQSAVVIMNHIKLIEIFMDVNKWSTVFCGIVSRALLLEVLSTGVAGNRNGALQVITAEFQVPTPLVPTRENYMVRYCKKHGDGTWAIVDVSLDTLRPTSMPKISRRRPSGCLIQELPNGFSKVTWVEHVEEDIRAVHNLYQSLVSSGLAFGATRWVATLDRQCERLASSMANDIAAGDLRSNHLLFIL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 52795261 52796641 - Bma020612.1 Bma04g01677 82046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01677 340 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 331 IPR042160 -
Bma04g01677 340 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-LIKE 2 331 - -
Bma04g01677 340 Pfam START domain 97 317 IPR002913 GO:0008289
Bma04g01677 340 SMART START_1 96 317 IPR002913 GO:0008289
Bma04g01677 340 CDD START_ArGLABRA2_like 91 316 - -
Bma04g01677 340 ProSiteProfiles START domain profile. 87 320 IPR002913 GO:0008289
Bma04g01677 340 SUPERFAMILY Bet v1-like 87 319 - -
Bma04g01677 340 Gene3D - 125 321 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01677 Bma-Chr4:52795261 Bma07g00005 Bma-Chr7:1084866 0 dispersed
Bma04g01677 Bma-Chr4:52795261 Bma12g00798 Bma-Chr12:37356095 2.99E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01677 K09338 - qsu:112016283 489.574