Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g01688 | ATGGAAAATATTGCGGCCCAGTTGAAGAGGGGGATATCCAGGCAGTTTTCCACCGGTTCGCTTGGCCGCAACCTGAGCCGGCAGTTTACGCGCCAGTCATCGCTTGACCCGAGGCGGAAAAATGTCAGATTTAGCTTCGGAAGGCAGTCTTCGCTGGACCCCATCCGGCGCAGCCCTAGTCGCGAGAACGATCTATCCGTGCCTGAGAACCTTGACTCAACCATGAACCTTCTTTTCTTGGCGTGTCGGGGGGACGTCAAGGGAGTCAATGATTTGCTCGATGACGGGGTCGATGTCAATAGCATCGACTTAGATGGCCGAACTGCGTTGCATATCGCCGCATGCGAAGGCCACGTTGAGGTTGTCAAGCTCTTGCTCAGCCGAAGGGCCAATATGGATGCTCGTGATCGCTGGGGCAGTACGGCAGCTGCTGATGCCAAACACTATGGGCAGACAGAGGTTTTCAACATTTTGAAGGCTCGCGGAGCAAAAGTTCCTAAAAACAGGAGGACGCCAATGACGGTTGCAAATCCCCGTGAAGTTCCAGAGTATGAGCTTAATCCACTTGAGCTTCAAATCCGTAGGGGAGATGGAATCTCCAAGGGCACGTATCAAGTAGCTAAATGGAATGGAACGAAGGTTGCAGTAAAAATACTTGATAAAGAGAGCTACTCAAACCCTGATACTATAATTGCTTTCAGACATGAGTTAGCTCTATTAGAAAAGGTCCGCCATCCTAACGTAGTACAATTTGTTGGAGCAGTTACCCAGAATGTTCCAATGATGATTGTGTCAGAGTATCATTCGAAGGGAGACTTGGCTGGCTATATTCAAAAGAAAGGGCGCTTGTCTCCATCTAAAGCTCTCAGATTTGCTCTTGATATTGCTAGGCATGTCTTGGGAATGAACTATCTTCATGAAGTTAAGCCAGACCCCATTATCCACTGTGATCTAAAGCCAAAAAATATTTTGCTCGACGTTGGAGGTCAATTGAAGGTAGCTGGATTTGGTTTGATAAGGTTATCAAAAATTTCACCGGACAAAGCAAAACTAGCACTCCCTGAGGCTAACATTGACCTTTCAAGCATATATTTGGCGCCTGAGGTTTACAAGAATGAAATATTTGACAGAAGTGTGGACTCGTTTTCTTTTGGTCTAATTGTATATGAGATGATTGAGGGCATACAACCTTTCCATCCTAAACCTCCCGAAGAGGCTGCAAAAATCATCTGTTTGGAAGGACAAAGACCTCAATTCAAGATCAAATTGAAAAATTATCCACCGGATTTGATAGAGTTAATTGAGGAATGCTGGGATCCAGAACCTGTTGTAAGGCCAACTTTTTCTGAGATTATTGTTCGTTTGGATAAAATAGTGTCCAACTGCTCAAAACAAGGATGGTGGAAGGACACTTTTAAGCTTCCGTGGTATGTCTTCTGA | 1440 | 45.56 | MENIAAQLKRGISRQFSTGSLGRNLSRQFTRQSSLDPRRKNVRFSFGRQSSLDPIRRSPSRENDLSVPENLDSTMNLLFLACRGDVKGVNDLLDDGVDVNSIDLDGRTALHIAACEGHVEVVKLLLSRRANMDARDRWGSTAAADAKHYGQTEVFNILKARGAKVPKNRRTPMTVANPREVPEYELNPLELQIRRGDGISKGTYQVAKWNGTKVAVKILDKESYSNPDTIIAFRHELALLEKVRHPNVVQFVGAVTQNVPMMIVSEYHSKGDLAGYIQKKGRLSPSKALRFALDIARHVLGMNYLHEVKPDPIIHCDLKPKNILLDVGGQLKVAGFGLIRLSKISPDKAKLALPEANIDLSSIYLAPEVYKNEIFDRSVDSFSFGLIVYEMIEGIQPFHPKPPEEAAKIICLEGQRPQFKIKLKNYPPDLIELIEECWDPEPVVRPTFSEIIVRLDKIVSNCSKQGWWKDTFKLPWYVF | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 53102334 | 53114412 | + | Bma020624.1 | Bma04g01688 | 82057 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g01688 | 479 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 33 | 475 | - | - | |
Bma04g01688 | 479 | SUPERFAMILY | Protein kinase-like (PK-like) | 199 | 455 | IPR011009 | - | |
Bma04g01688 | 479 | SUPERFAMILY | Ankyrin repeat | 75 | 167 | IPR036770 | - | |
Bma04g01688 | 479 | ProSiteProfiles | Ankyrin repeat region circular profile. | 105 | 137 | - | - | |
Bma04g01688 | 479 | SMART | serkin_6 | 193 | 459 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma04g01688 | 479 | CDD | STKc_MAP3K-like | 199 | 455 | - | - | |
Bma04g01688 | 479 | Gene3D | Transferase(Phosphotransferase) domain 1 | 270 | 471 | - | - | |
Bma04g01688 | 479 | ProSiteProfiles | Protein kinase domain profile. | 189 | 459 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma04g01688 | 479 | Gene3D | Phosphorylase Kinase; domain 1 | 184 | 269 | - | - | |
Bma04g01688 | 479 | Gene3D | - | 38 | 183 | IPR036770 | - | |
Bma04g01688 | 479 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 313 | 325 | IPR008271 | GO:0004672|GO:0006468 | |
Bma04g01688 | 479 | PIRSF | ILK | 8 | 476 | - | - | |
Bma04g01688 | 479 | Pfam | Protein tyrosine and serine/threonine kinase | 199 | 454 | IPR001245 | GO:0004672|GO:0006468 | |
Bma04g01688 | 479 | PRINTS | Tyrosine kinase catalytic domain signature | 265 | 278 | IPR001245 | GO:0004672|GO:0006468 | |
Bma04g01688 | 479 | PRINTS | Tyrosine kinase catalytic domain signature | 307 | 325 | IPR001245 | GO:0004672|GO:0006468 | |
Bma04g01688 | 479 | PRINTS | Tyrosine kinase catalytic domain signature | 426 | 448 | IPR001245 | GO:0004672|GO:0006468 | |
Bma04g01688 | 479 | PRINTS | Tyrosine kinase catalytic domain signature | 379 | 401 | IPR001245 | GO:0004672|GO:0006468 | |
Bma04g01688 | 479 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 33 | 475 | - | - | |
Bma04g01688 | 479 | SMART | ANK_2a | 105 | 134 | IPR002110 | GO:0005515 | |
Bma04g01688 | 479 | SMART | ANK_2a | 138 | 167 | IPR002110 | GO:0005515 | |
Bma04g01688 | 479 | SMART | ANK_2a | 73 | 101 | IPR002110 | GO:0005515 | |
Bma04g01688 | 479 | Pfam | Ankyrin repeats (3 copies) | 78 | 165 | IPR002110 | GO:0005515 | |
Bma04g01688 | 479 | ProSiteProfiles | Ankyrin repeat profile. | 105 | 137 | IPR002110 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g01451 | Bma-Chr3:41255879 | Bma04g01688 | Bma-Chr4:53102334 | 0 | dispersed | |
Bma04g01688 | Bma-Chr4:53102334 | Bma14g01847 | Bma-Chr14:39510068 | 3.29E-135 | dispersed | |
Bma04g01688 | Bma-Chr4:53102334 | Bma04g00428 | Bma-Chr4:3515283 | 3.69E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66485 | PF07714 | PK_Tyr_Ser-Thr | 3.40E-46 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g01688 | - | - | twl:120005582 | 808.52 |