Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g01707 ATGTCGTTCCGAAGCATTGTCCAGGATGTAAGAGACTATACAGGGAGTTTATCTAGACGGAGGTTTGAGTTCAGGCTGACCTCTCATGGCAGAGGGAAGTCACACGGGTCATTGCACGATTTAGATAATCAGCAGAATGTGGTTCAGAGCAGTTGTTGGGCAACCCTACCACCTGAACTTCTGTACGATGTCATTCGCAGACTAGAAGAGAGCGAAAGCACTTGGCCTTCTCGAAAACATGTTGTGGCTTGTGCTGCAGTGTGCCATTCTTGGAGGGTGATGTGCAAAGAAATTGTTAAAAGTCCAGAATTTTGTGGGAAGCTTACATTTCCCGTCTCCCTGAAGCAGTTTCGTTATTTGACATTTCAGCCAGGGCCACGAGACGGAAGCATTCAGTGCTTCATAAGAAGGGATAAATCTAATCTATCATACCGCCTCTATCTGTGCCTTAGCCCTGGCAAGTCCTTACTAGTCGAAAACGGGAAGTTTCTGCTCTCCGCTAAGCGAATTCGAAAAGTTACTAACACAGAGTACATAATCTCTACAAATGCTGATAACATTTCAAGATCAAGCAACACTTTCATTGGAAAGCTGAGGTCAAACTTCCTCGGCACGAAATTCATCATATACGATACACAGCCTCCATATGCGTCGGCGCCCCTCCATCCTCCTGGGAAAACAAGCAGAAGGTTCTATACCAAAAAGGTGTCTCCAAGAGTCCCAAGCGCACACTATGACATAGCCCATATAGCATACGAACTAAACGTGCTAGGCACACGTGGCCCTCGAAGAATGCACTGTGTGATGGATTCTATTCCGGCCTCAGCTCTTATTGCAGGAAATACGGTCCCTGGCCAACCAGAGCTCATTACCCGATGCCTCGAAGAATCGTTCCGAAGTATGTCATTCTCCAAATCTGTTCATCACTCAAATGAATTCAGTAGTGCAAGATTTTCTGAATTCAGAAGAATTGGTAGCGATGATGAGAATGTCGAAACGAGACCCTTGGTTCTTAAAAATAAGCCCCCAAGATGGCACGAACAATTGCAATGTTGGTGCCTGAATTTCCGAGGGCGTGTGACTGTGGCGTCCGTCAAGAACTTTCAGCTGATTGCTGCTGCACAGCCGGCTGGGGCACCGACGCCATCCCAGCCAACTCCACCTGAGCATGACAAGATAATTCTGCAGTTTGGTAAGGTGGGTAAAGACATGTTCACCATGGATTACTGCTATCCGCTCTCAGCTTTTCAGGCATTTGCGATCTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1302 46.85 MSFRSIVQDVRDYTGSLSRRRFEFRLTSHGRGKSHGSLHDLDNQQNVVQSSCWATLPPELLYDVIRRLEESESTWPSRKHVVACAAVCHSWRVMCKEIVKSPEFCGKLTFPVSLKQFRYLTFQPGPRDGSIQCFIRRDKSNLSYRLYLCLSPGKSLLVENGKFLLSAKRIRKVTNTEYIISTNADNISRSSNTFIGKLRSNFLGTKFIIYDTQPPYASAPLHPPGKTSRRFYTKKVSPRVPSAHYDIAHIAYELNVLGTRGPRRMHCVMDSIPASALIAGNTVPGQPELITRCLEESFRSMSFSKSVHHSNEFSSARFSEFRRIGSDDENVETRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAGAPTPSQPTPPEHDKIILQFGKVGKDMFTMDYCYPLSAFQAFAICLSSFDTKLACE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 53284650 53286778 - Bma020642.1 Bma04g01707 82076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g01707 433 PRINTS Tubby superfamily signature 338 355 IPR000007 -
Bma04g01707 433 PRINTS Tubby superfamily signature 411 433 IPR000007 -
Bma04g01707 433 PRINTS Tubby superfamily signature 390 409 IPR000007 -
Bma04g01707 433 PRINTS Tubby superfamily signature 194 218 IPR000007 -
Bma04g01707 433 PRINTS Tubby superfamily signature 356 372 IPR000007 -
Bma04g01707 433 PRINTS Tubby superfamily signature 178 194 IPR000007 -
Bma04g01707 433 PRINTS Tubby superfamily signature 244 271 IPR000007 -
Bma04g01707 433 PANTHER TUBBY-RELATED 1 433 - -
Bma04g01707 433 ProSitePatterns Tub family signature 2. 418 433 IPR018066 -
Bma04g01707 433 SUPERFAMILY Tubby C-terminal domain-like 112 433 IPR025659 -
Bma04g01707 433 Pfam Tub family 123 428 IPR000007 -
Bma04g01707 433 ProSitePatterns Tub family signature 1. 356 369 IPR018066 -
Bma04g01707 433 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 433 - -
Bma04g01707 433 Pfam F-box domain 53 99 IPR001810 GO:0005515
Bma04g01707 433 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Bma04g01707 433 Gene3D Tubby Protein; Chain A 109 433 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01707 Bma-Chr4:53284650 Bma05g00558 Bma-Chr5:31534520 0 dispersed
Bma04g01707 Bma-Chr4:53284650 Bma05g00585 Bma-Chr5:34169253 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57272 PF01167 Tub 7.70E-112 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g01707 K19600 - jre:109007061 695.271