Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00024 ATGGAAGAGAAAGCTGCTAGAGCTTATGATCTGGCAGCCCTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCTGCTCCAAACTTACGCGGTGGAGCTCGAAGAAATGAAGAGCATGAGCCGGGAGGAGTATGTGACCCAACTTAGAAGGAAAAGCAGTGGGTTTTCCAGGGGAGCTTCGGTGTACAGAGGAGTGACGAGACATCACCAGCATGGAAGGTGGCAAGCTCGAATTGGAAGAGTGGCAGGAAACAAAGACCTTTATCTGGGGACTTTCAGCACCCAAGAAGAAGCAGCAGAAGCATATGACATAGCTGCCATTAAATTTCGGGGGCCGAATGCAGTTACTAATTTCGATTCTTCGAGATACGACGTTGAAAGAATCACGAGCAGCCATACCCTTCTCGGCCGAGACCTCGGCAGGAGAAACAGAGAGATCGATTCGGAAGGGAATCGCTGCTCATTAGCCATTGATGCTACTGAAATAGAGATCAACCCTTCTGCAGAAAACGGGAACGGCGGCTGCTCGGATTGGAAGATGGGAACGAGAGAGGCGATGCCTGATAGAACAGGCAGTACAACCACGGCACCATCGTGGTCAAGGTTTATGGTGGAATCAAATGGTGGAACTCGTTGGTTTCCTCCTCCCCATTTGCCTTTTTTTGCAGCATGGAATGATATTTGGCGTTAA 693 49.49 MEEKAARAYDLAALKYWGPSTHINFLLQTYAVELEEMKSMSREEYVTQLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGPNAVTNFDSSRYDVERITSSHTLLGRDLGRRNREIDSEGNRCSLAIDATEIEINPSAENGNGGCSDWKMGTREAMPDRTGSTTTAPSWSRFMVESNGGTRWFPPPHLPFFAAWNDIWR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1876250 1877290 - Bma020713.1 Bma05g00024 82108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00024 230 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 163 - -
Bma05g00024 230 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Bma05g00024 230 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Bma05g00024 230 Gene3D AP2/ERF domain 1 27 IPR036955 GO:0003700|GO:0006355
Bma05g00024 230 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Bma05g00024 230 CDD AP2 61 122 IPR001471 GO:0003700|GO:0006355
Bma05g00024 230 ProSiteProfiles AP2/ERF domain profile. 1 26 IPR001471 GO:0003700|GO:0006355
Bma05g00024 230 SUPERFAMILY DNA-binding domain 61 121 IPR016177 GO:0003677
Bma05g00024 230 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Bma05g00024 230 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 1 163 - -
Bma05g00024 230 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Bma05g00024 230 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00024 Bma-Chr5:1876250 Bma13g01218 Bma-Chr13:45455279 1.64E-76 dispersed
Bma01g02230 Bma-Chr1:79307280 Bma05g00024 Bma-Chr5:1876250 1.02E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57278 PF00847 AP2 4.00E-11 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00024 K09285 - csv:101212797 269.24