Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00028 ATGCCGATGTTCCATCCCTCTAGCCGGAGGAACGGGCAAGTTCTGGGCATCGACGACGGAGGGCGGCTGCTAGATCTGGAAACTGCCGTGAAAGATGGGGTTTTGGGTGGTTCATGCGGTGGCTCAATCTGCGATAATGGCTTCTCTAAGAAAATAGATCTCAAGGAAATGATAGAGGAGCTGGAAGCCATAGAAGTTCCCTCTGTCTTCATCTGCCCAATCTCTCTAGAGCCCATGACAGACCCAGTAACCCTCTGCACTGGCCAAACTTATGAAAGATCAAACATTCTAAAATGGCTGTCCTTGGGCCATTTTTCGTGCCCCACGACAATGCAAGAGCTTTGGGATGACTCTATCACGCCCAATAGAACCCTTTACCAGTTGATACTGACCTGGTTTTCTCAGAAGTACTCCGCCATGAAAAAGAAGTCGGATGATGTGCAGGGGAGGGCCATGGAGCTTCTGGAGACGCTGAAGAAGGTGAAGGGTCAAGCCAGAGTTCAAGCTCTGAAAGAACTCAGGCGACTCGTCTCGGCAAAAGCTTCTGCCAAGAAGACCGTGGTCGACAATGGCGGCGTTGGCTTGATTTCTTCTCTTCTGGGTTCTTTTACTTCTCACGCAGTTGGGTCAGAATCTGTTGGGATTCTTGTAAATTTGGAGATCGATTCTGAATCCAAGACAAATCTGATTCAACCCTCCAAAATATCTTTGATAGTTGATATACTCAACGAAGGATCCATCGAAACAAAGATCAACTGCACTAAATTCCTTGAAATTTTGATCAAAGGCAGTGATTTTAGAACAGAAACCATTTCAAGATTGAGTCTACTGGTTGGATTGCTGCGATTAGTGAAGGACAAAAGATACCCTTCTGGAATTTTGGCTGGACTTAGTCTTCTCAAAACTATTTGTGGTCATGAAGCAGTAAAAAACTCATTTTTAAGCGTCGGATTGGTGCAAACTCTAGTGGACCTTCTGCCATCTTTGAATACAGAATGTTCAGAGTTAGCTCTTTATGTTCTTGAATCAGTCTCTTACCTTGCAGAAGGAAAAGTTTGCCTAAAAGAATGTCCGAATACGATATCAAATATCGTGCCGTTGATGATGAGAGTCTCGGAGACTTGCACTCGGCTTTCGATGTCGATCTTACTGGCCATTTGTAAGGTTGGTCCCGAAGAATTTGCTTCACTTGCACTAGAGGCAGGCTTGGCAAGTAAGCTTCTTCTTGTTATCCAAAGTGGGTGTAATCCTGCTCTAAAGCAGCAATCTTCAGCGCTGCTGAAACTGTGTAGCTTGAATTACACACCCTCTCTCTTCATTTCCAAGTGTAATCTCACAAGAACTATACAATAA 1353 44.72 MPMFHPSSRRNGQVLGIDDGGRLLDLETAVKDGVLGGSCGGSICDNGFSKKIDLKEMIEELEAIEVPSVFICPISLEPMTDPVTLCTGQTYERSNILKWLSLGHFSCPTTMQELWDDSITPNRTLYQLILTWFSQKYSAMKKKSDDVQGRAMELLETLKKVKGQARVQALKELRRLVSAKASAKKTVVDNGGVGLISSLLGSFTSHAVGSESVGILVNLEIDSESKTNLIQPSKISLIVDILNEGSIETKINCTKFLEILIKGSDFRTETISRLSLLVGLLRLVKDKRYPSGILAGLSLLKTICGHEAVKNSFLSVGLVQTLVDLLPSLNTECSELALYVLESVSYLAEGKVCLKECPNTISNIVPLMMRVSETCTRLSMSILLAICKVGPEEFASLALEAGLASKLLLVIQSGCNPALKQQSSALLKLCSLNYTPSLFISKCNLTRTIQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1918102 1919454 - Bma020717.1 Bma05g00028 82112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00028 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Bma05g00028 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Bma05g00028 450 SUPERFAMILY ARM repeat 154 349 IPR016024 -
Bma05g00028 450 Gene3D - 139 445 IPR011989 -
Bma05g00028 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Bma05g00028 450 SUPERFAMILY RING/U-box 60 136 - -
Bma05g00028 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 40 449 - -
Bma05g00028 450 PANTHER WDSAM1 PROTEIN 40 449 IPR045185 GO:0061630
Bma05g00028 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Bma05g00028 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00028 Bma-Chr5:1918102 Bma06g00334 Bma-Chr6:7154614 0 dispersed
Bma05g00028 Bma-Chr5:1918102 Bma03g01153 Bma-Chr3:15777958 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00028 - - vvi:100255725 646.351