Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00029 ATGGAGGACGCTTACGCCAGATCTGTTAGTGAGGTATTGGATTTCTTTGGGGTGGACCCGTCAAGAGGACTTACTGACGATCAGGTTGCTCAACATGCTAGAATTTTCGGTAAAAATGTACTACCTGAAGAGAGAAGGGCTCCATTTTGGAAATTGGTACTAAAACAGTTCGATGATTTACTTGTTAAGATATTAATTGCTGCGGCACTTGTTTCTTTTCTCTTGGCATTGATTAATGGAGAAACTGGATTAACTGCTTTTTTGGAGCCTTCTGTTATTCTGTTGATATTGGCTGCAAACGCAGCTGTTGGTGTAATCACAGAAAGTAATGCTGAAAAAGCACTCGAGGAGCTACGGGCCTATCAAGCCGATATTGCAACTGTTATGCGAAATGGTTGCTTTTCCATACTCCCAGCAACAGATCTAGTTCCAGGTGATATCGTAGATGTTTCAGTGGGATGCAAAATTCCAGCTGATATGCGGATGATAGAAATGCTAAGTAATCAATTTCGCGTAGATCAGGCAATTCTTACAGGTGAGAGTTGCTCTGTAGAAAAAGAGCTTGAACCCACGACTGCAGCAAATGCTGTATATCAAGACAAGACCAATATTCTTTTCTCGGGTACAGTTGTAGTTGCTGGTAGGGCAAGGGCTACGGTTGTAGGAGTGGGGGCTAATACTGCCATGGGCAGCATACGAGATTCCATGTTACAAACAGCAGATGAGGTGACACCATTGAAGAAGAAGCTAGATGAGTTTGGTACTTTTTTAGCCAAGGTCATTGCTGGAATATGTCTACTGGTATGGATAGTAAACATTGGTCACTTTCACGACCCTTCTCATGGAGGGTTCATACGTGGTGCAATTCATTACTTTAAGATTGCAGTTGCCCTTGCAGTTGCAGCAATACCTGAAGGACTTCCTGCTGTTGTTACAACGTGTTTGGCTCTTGGAACCAAACGAATGGCTCGGATGAATGCAATTGTAAGATCTTTGCCATCCGTGGAGACATTAGGCTGTACTACTGTAATATGCAGTGACAAAACTGGAACTTTGACTACCAATATGATATCTGTTTCCAAGCTATGTGTGGTTCATTCTGTTATGCATGGCCCTTTAATTGATGAATACAGCATCAGTGGTACCACATATGCACCTGAAGGCATTATATATGACAGCACAGGGGTTCAGGTGGAATTTCCAGCTCAGTTATCTTGTCTTCTACATATGGCTATGTGCTCAGCCCTGTGCAATGAGTCTGTATTGCAATATAATCCTGACAAGGGTAACTATGAAAAGATTGGCGAATCTACTGAAGTGGCGCTACGTGTTCTAGCAGAGAAGGTGGGTCTTCCTGGTTTTGACTCAATGCCTTCATCTTTGAATATCCTAAGCAAACATGAACGAGCTTCCTACTGCAACCACCATTGGGAAAGTCAATTCAAAAAGATTTCAATATTGGACTTTACTCGTGATCGTAAAATGATGAGTGTTCTATGTAGCAGAAATCAGCTACAGATATTATTTGCAAAAGGTGCTCCTGAGAGTATCATTTCTAGATGTTCTTATATACTTTGCAATGAAGATGGTTCCATTTCACCCCTAACTTCCAACATTCAAGCTGAGCTAGAGTCAAAGTTTCAAAGTTTTGCAGGAAAAGAAACTCTAAGATGCCTGGCTTTGGCTTTGAAGTGGATGCCTACAGATCAACAGAGTTTGTCTATTGATGACGAGAAAGAACTTACATTCGTTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTCAGAAGTGCTATGCTTTCATGCATGACTGCTGGAATACGTGTTATAGTGGTCACCGGTGATAACAAGTCAACAGCTGAATCCATCTGCCGCCAGATTGGTGGTCCATTTGATCATATCAATCTTCCAGGACATTCTTATACTGCTTCTGAGTTCGAAGAACTACCTTCATTGCAACAAACTGTGGCAGTGCAACATATGACGCTATTCAGCAGGGTTGAACCTTCTCATAAGAGGATGCTGGTTGAGGCTTTACAGCATCAAAATGAAGTGGTCGCAATGACTGGTGATGGCGTCAATGATGCTCCTGCACTAAAAAAAGCTGACATAGGGATCGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCAGATATGGTTTTGGCAGATGACAATTTTGCTACGATTGTTGCAGCCGTTGCTGAGGGACGGGCTATATATAATAACACGAAGCAGTTTATCAGATACATGATCTCATCGAACATTGGTGAAGTGGTTTGTATATTTTTGGCAGCTGTACTTGGAATTCCAGAAACCCTTGCTCCTGTTCAGCTTCTCTGGGTTAATTTGGTCACTGATGGATTACCTGCCACTGCAATTGGATTTAACAGGCAAGACTCTGATGTAATGAAGGTTAAACCACGTAAGGTGAATGAAGCTGTTGTTACTGGGTGGCTGTTCTTTCGTTACTTGGTCATTGGAGCCTATGTCGGCTTTGCCACTATTGCCGGTTTCATTTGGTGGTTTGTTTACTCTGATAGTGGTCCTCAACTACCATATAGTGAATTGATGAATTTTGACAGTTGTTCAGCAAGGGAGACGAGTTACCCATGCAGTGTATTCGATGATAGGCGTCCATCAACTGTTTCAATGACTGTCCTTGTTGTTGTTGAAATGTTTAATGCTTTGAATAATTTGAGTGAAAACCAATCTATTATTGTCATCCCTCCCTGGAGTAATTTATGGCTTGTAGGTTCAATTGTCCTTACAATGATTCTTCACGTACTCATTTTATATGTACAGCCGCTTTCTGTTCTTTTCTCTGTAACCCCACTATCTTGGGCTGAGTGGACTGTTGTCTTGTATCTTTCATTTCCTGTTGTAATCATTGACGAAGTGTTGAAGTTCTTCTCTAGACATTCCAATGGAGTAAGATTCAATTTCAGATTCAGAAGGCACGACTTTCTTCCGAAGAAAGAACTTCACAACAAGTAA 3006 41.88 MEDAYARSVSEVLDFFGVDPSRGLTDDQVAQHARIFGKNVLPEERRAPFWKLVLKQFDDLLVKILIAAALVSFLLALINGETGLTAFLEPSVILLILAANAAVGVITESNAEKALEELRAYQADIATVMRNGCFSILPATDLVPGDIVDVSVGCKIPADMRMIEMLSNQFRVDQAILTGESCSVEKELEPTTAANAVYQDKTNILFSGTVVVAGRARATVVGVGANTAMGSIRDSMLQTADEVTPLKKKLDEFGTFLAKVIAGICLLVWIVNIGHFHDPSHGGFIRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARMNAIVRSLPSVETLGCTTVICSDKTGTLTTNMISVSKLCVVHSVMHGPLIDEYSISGTTYAPEGIIYDSTGVQVEFPAQLSCLLHMAMCSALCNESVLQYNPDKGNYEKIGESTEVALRVLAEKVGLPGFDSMPSSLNILSKHERASYCNHHWESQFKKISILDFTRDRKMMSVLCSRNQLQILFAKGAPESIISRCSYILCNEDGSISPLTSNIQAELESKFQSFAGKETLRCLALALKWMPTDQQSLSIDDEKELTFVGLVGMLDPPREEVRSAMLSCMTAGIRVIVVTGDNKSTAESICRQIGGPFDHINLPGHSYTASEFEELPSLQQTVAVQHMTLFSRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFLAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNRQDSDVMKVKPRKVNEAVVTGWLFFRYLVIGAYVGFATIAGFIWWFVYSDSGPQLPYSELMNFDSCSARETSYPCSVFDDRRPSTVSMTVLVVVEMFNALNNLSENQSIIVIPPWSNLWLVGSIVLTMILHVLILYVQPLSVLFSVTPLSWAEWTVVLYLSFPVVIIDEVLKFFSRHSNGVRFNFRFRRHDFLPKKELHNK 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1921296 2055316 - Bma020718.1 Bma05g00029 82113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00029 1001 Gene3D - 342 735 IPR023214 -
Bma05g00029 1001 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma05g00029 1001 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma05g00029 1001 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma05g00029 1001 PANTHER CALCIUM-TRANSPORTING ATPASE 2 980 - -
Bma05g00029 1001 Coils Coil 111 131 - -
Bma05g00029 1001 Gene3D - 22 237 - -
Bma05g00029 1001 Gene3D - 55 976 - -
Bma05g00029 1001 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Bma05g00029 1001 Pfam Cation transport ATPase (P-type) 415 524 - -
Bma05g00029 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 977 IPR023298 -
Bma05g00029 1001 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Bma05g00029 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Bma05g00029 1001 SFLD Haloacid Dehalogenase 326 743 - -
Bma05g00029 1001 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Bma05g00029 1001 CDD P-type_ATPase_SERCA 5 976 - -
Bma05g00029 1001 Gene3D - 355 592 IPR023299 GO:0000166
Bma05g00029 1001 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 661 779 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma05g00029 1001 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 366 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma05g00029 1001 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 2 980 - -
Bma05g00029 1001 SFLD p-type atpase 326 743 IPR044492 -
Bma05g00029 1001 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Bma05g00029 1001 Pfam E1-E2 ATPase 122 324 - -
Bma05g00029 1001 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Bma05g00029 1001 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Bma05g00029 1001 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Bma05g00029 1001 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Bma05g00029 1001 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Bma05g00029 1001 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Bma05g00029 1001 Pfam Cation transporter/ATPase, N-terminus 5 72 IPR004014 -
Bma05g00029 1001 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 53 846 IPR005782 GO:0005388|GO:0006816|GO:0016021
Bma05g00029 1001 Pfam Cation transporting ATPase, C-terminus 775 974 IPR006068 -
Bma05g00029 1001 SUPERFAMILY HAD-like 343 794 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00029 Bma-Chr5:1921296 Bma07g00120 Bma-Chr7:1932200 0 dispersed
Bma04g00144 Bma-Chr4:1235599 Bma05g00029 Bma-Chr5:1921296 4.72E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00029 K05853 - zju:107433708 1716.05