Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma05g00038 | ATGGATGATAATCACCAAAAGTCTGAGTCGGAAATGGAGCTTTTGATGATGATGCATCAGATGGGAAGAACTCCACAATTCAGCGAAACCCTTGATTTCACTGATCTTCCCGGTTCAAGCAACGGGAGTAAACTGCGTGGTTATGCTCCATACTTTATGGAAAATCCGCAAACCGGGCAGGATTCGTCGGCGTTCGTCAAAGTAGAATCTACTGTTTCGCCGATGAACACTAGCAGAAAGTGGAGAGAAGATATTCCGACGACGCCACTGGAGAAGCCAGTGAGCTCGGTGGAGGCAATGAGGGAGATGATATTCAGAATAGCAGTAATGCAGCCAGTAGAGATAGATCCAGAGGCTGTAAAGCCGCCGAAGAGAAGGAACGTGAAGATATCAAAGGACCCTCAAAGCGTGGCTGCAAGGCATAGGAGAGAGAAAATAAGTGAGAGAATAAGAATACTCCAGAGACTGGTTCCAGGAGGGACAAAGATGGATACAGCTTCCATGTTGGACGAGGCAGTTCACTACGTCAAGTTTTTGAAGACGCAAGTCCAGTCCTTGGAAGGGGGCAGTAGGCCTAATGGAATAGGGTAA | 591 | 47.38 | MDDNHQKSESEMELLMMMHQMGRTPQFSETLDFTDLPGSSNGSKLRGYAPYFMENPQTGQDSSAFVKVESTVSPMNTSRKWREDIPTTPLEKPVSSVEAMREMIFRIAVMQPVEIDPEAVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLDEAVHYVKFLKTQVQSLEGGSRPNGIG | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2140989 | 2141579 | - | Bma020727.1 | Bma05g00038 | 82122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma05g00038 | 196 | Pfam | Helix-loop-helix DNA-binding domain | 140 | 179 | IPR011598 | GO:0046983 | |
Bma05g00038 | 196 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 134 | 187 | IPR036638 | GO:0046983 | |
Bma05g00038 | 196 | SMART | finulus | 136 | 185 | IPR011598 | GO:0046983 | |
Bma05g00038 | 196 | Gene3D | - | 129 | 191 | IPR036638 | GO:0046983 | |
Bma05g00038 | 196 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 50 | 187 | IPR045843 | GO:0003700|GO:0006355 | |
Bma05g00038 | 196 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 130 | 179 | IPR011598 | GO:0046983 | |
Bma05g00038 | 196 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 50 | 187 | - | - | |
Bma05g00038 | 196 | CDD | bHLH_AtIND_like | 131 | 187 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma04g00160 | Bma05g00038 | CCT | |
Bma01g02271 | Bma05g00038 | CCT | |
Bma04g00160 | Bma05g00038 | ECH | |
Bma01g02271 | Bma05g00038 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00160 | Bma-Chr4:1391143 | Bma05g00038 | Bma-Chr5:2140989 | 1.18E-59 | dispersed | |
Bma05g00038 | Bma-Chr5:2140989 | Bma09g00395 | Bma-Chr9:33200662 | 2.95E-41 | dispersed | |
Bma01g02271 | Bma-Chr1:79860933 | Bma05g00038 | Bma-Chr5:2140989 | 6.18E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57280 | PF00010 | HLH | 9.70E-07 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma05g00038 | - | - | pvy:116125694 | 197.978 |