Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00038 ATGGATGATAATCACCAAAAGTCTGAGTCGGAAATGGAGCTTTTGATGATGATGCATCAGATGGGAAGAACTCCACAATTCAGCGAAACCCTTGATTTCACTGATCTTCCCGGTTCAAGCAACGGGAGTAAACTGCGTGGTTATGCTCCATACTTTATGGAAAATCCGCAAACCGGGCAGGATTCGTCGGCGTTCGTCAAAGTAGAATCTACTGTTTCGCCGATGAACACTAGCAGAAAGTGGAGAGAAGATATTCCGACGACGCCACTGGAGAAGCCAGTGAGCTCGGTGGAGGCAATGAGGGAGATGATATTCAGAATAGCAGTAATGCAGCCAGTAGAGATAGATCCAGAGGCTGTAAAGCCGCCGAAGAGAAGGAACGTGAAGATATCAAAGGACCCTCAAAGCGTGGCTGCAAGGCATAGGAGAGAGAAAATAAGTGAGAGAATAAGAATACTCCAGAGACTGGTTCCAGGAGGGACAAAGATGGATACAGCTTCCATGTTGGACGAGGCAGTTCACTACGTCAAGTTTTTGAAGACGCAAGTCCAGTCCTTGGAAGGGGGCAGTAGGCCTAATGGAATAGGGTAA 591 47.38 MDDNHQKSESEMELLMMMHQMGRTPQFSETLDFTDLPGSSNGSKLRGYAPYFMENPQTGQDSSAFVKVESTVSPMNTSRKWREDIPTTPLEKPVSSVEAMREMIFRIAVMQPVEIDPEAVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLDEAVHYVKFLKTQVQSLEGGSRPNGIG 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2140989 2141579 - Bma020727.1 Bma05g00038 82122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00038 196 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Bma05g00038 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 187 IPR036638 GO:0046983
Bma05g00038 196 SMART finulus 136 185 IPR011598 GO:0046983
Bma05g00038 196 Gene3D - 129 191 IPR036638 GO:0046983
Bma05g00038 196 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 50 187 IPR045843 GO:0003700|GO:0006355
Bma05g00038 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Bma05g00038 196 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 50 187 - -
Bma05g00038 196 CDD bHLH_AtIND_like 131 187 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00160 Bma05g00038 CCT
Bma01g02271 Bma05g00038 CCT
Bma04g00160 Bma05g00038 ECH
Bma01g02271 Bma05g00038 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00160 Bma-Chr4:1391143 Bma05g00038 Bma-Chr5:2140989 1.18E-59 dispersed
Bma05g00038 Bma-Chr5:2140989 Bma09g00395 Bma-Chr9:33200662 2.95E-41 dispersed
Bma01g02271 Bma-Chr1:79860933 Bma05g00038 Bma-Chr5:2140989 6.18E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57280 PF00010 HLH 9.70E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00038 - - pvy:116125694 197.978