Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00039 ATGCACGCGAAAACTGACTCTGAGGTCACCAGCCTCGCACCATCTTCTCCGACCAGATCTCCTCGCCGGCCCGTCTACTACGTTCAGAGCCCGTCCAGGGATTCGCACGATGGGGAGAAGACGGCGACGTCGTTTCATTCAACGCCGGTGCTCAGCCCCGTGGGATCGCCGCCACATTCTCACTCTTCCGTCGGTCGCCATTCGAGGGAGTCTTCGTCCAGCAGATTCTCCGGCTCTTTGAAGCCCGGATCGCGCAAGATCTCGCCCAACGATGGATCCCGCGGCGGCCATCGGAAGGGTCAGAAGCCGTGGAAGGAGTGCGATGTGATCGAAGAGGAAGGACTTCTTGAAGACGAAGATCGGAGAAAGGGTATTCCTCGCCGGTGCTATGTCCTCGCTTTCGTTCTCGGTTTCTTCGTTTTATTCACCTTCTTCTCTCTGATTCTATGGGGTGCAAGTAAGCCTATGAAGCCAATAATCACCATGAAGAGCATCACATTTGAGCAATTTAAGATCCAAGCAGGCTCCGATTCCACCGGAGTCGCCACCGACATGGCATCTGTAAACTCTACAGTAAAATTCACATTTCGCAACACGGGCACATTTTTCGGCGTTCATGTCAGCTCCATTCCTTTAGATCTATCCTACTCCGAGCTCACTGTCGCCTCCGGCAACATAAACGAGTTCTACCAATCGAGGAAGAGCCAGAAATCGATCACAGCGACAGTGACGGGTACAAGGGTCCCTCTGTACGGCGGGGGAGCGAGTCTGAGTAGCTCCACCGGAACGCCGGCGCTGCCAGTTCCTCTGAACCTGAATTTCGTGGTGAAGGCAAGAGCAAACGTATTGGGAAAACTGGTGAAGCCGAAATTCCAGAGGCGCGTTAATTGCGCCGTCACTTATGATCCTCTGAAACTCAACGTTGCCGTCTCTCTCAAGAACTGCACTGTCCATTGA 957 53.81 MHAKTDSEVTSLAPSSPTRSPRRPVYYVQSPSRDSHDGEKTATSFHSTPVLSPVGSPPHSHSSVGRHSRESSSSRFSGSLKPGSRKISPNDGSRGGHRKGQKPWKECDVIEEEGLLEDEDRRKGIPRRCYVLAFVLGFFVLFTFFSLILWGASKPMKPIITMKSITFEQFKIQAGSDSTGVATDMASVNSTVKFTFRNTGTFFGVHVSSIPLDLSYSELTVASGNINEFYQSRKSQKSITATVTGTRVPLYGGGASLSSSTGTPALPVPLNLNFVVKARANVLGKLVKPKFQRRVNCAVTYDPLKLNVAVSLKNCTVH 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2166729 2167870 - Bma020728.1 Bma05g00039 82123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00039 318 MobiDBLite consensus disorder prediction 1 104 - -
Bma05g00039 318 MobiDBLite consensus disorder prediction 8 25 - -
Bma05g00039 318 PANTHER PROTEIN, PUTATIVE-RELATED 59 316 - -
Bma05g00039 318 Pfam Late embryogenesis abundant protein 194 297 IPR004864 -
Bma05g00039 318 MobiDBLite consensus disorder prediction 69 86 - -
Bma05g00039 318 MobiDBLite consensus disorder prediction 42 62 - -
Bma05g00039 318 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 59 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00039 - - - pvy:116125652 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00625 Bma-Chr3:5154087 Bma05g00039 Bma-Chr5:2166729 1.20E-77 dispersed
Bma05g00039 Bma-Chr5:2166729 Bma09g00939 Bma-Chr9:48792904 7.00E-65 dispersed
Bma05g00039 Bma-Chr5:2166729 Bma11g00520 Bma-Chr11:6511700 3.97E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g750 . . . . . . . . Cmo05g00174 Cmo12g00501 . . . Car12g00512 Sed10g1237 . Cpe07g00489 Bhi04g00362 Tan02g1803 Cmetu03g1156 . Hepe08g1293 . Lcy13g2089 Cla08g01579 Cam08g2077 Cec08g1660 Cco08g1788 Clacu08g1763 . Cre08g1548 . Cone7ag1364 Cone17ag0848 Cone20ag0196 . . . Cme03g02057 Blo17g00878 . . . . Bpe05g00028 . Bma05g00039 . . . Cma12g00557 Cma05g00177 Car05g00149 . Cpe11g00145 . . . . . . . . . . . . . . . Lsi08g01483 Csa02g01939 Chy03g01553 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007272 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00039 Bma_Chr05 FPKM 21.991228 24.55271 19.061998 16.69346 5.733675 4.40207 5.179931 20.656233 27.749062 23.246265