Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00040 ATGTCGAACTATGCGTTCTTAAACGACCAGCTTTCGAAGAAAACCTCCATTTTCGGTTTACGCTTGTGGGTAGTTCTGGGTATTTGCGTCGGGGCAGCCATTGTTCTTGTTCTCTTCCTCGTTTCGCTCTGGTTCACTTCCAGGCGAAATAACGCCTCCAAATCGAAGAACTCCAAGAGTCTCACCATCCCTAATGTCTCCAAGGAAATCCAGGAAATCCGGGTCGACCATTCTCGCAGCACCACCCACCCCGACCCGAAGATACAGCTTACGGCAAACCCAGACCCGTTGCCGGAGACGGAGGCGTTAGCCATAGTGGCTCTGCCGGAGGACGAGAATCAAGCGGGTTGGCGGAAAAGAATTCACATTGAGATTGGGAAGGACCACCGGATTTCGTACCCTGAGAGGGTCGGTGGGTCGTCCGGAGAGGCTAGGTCCGGCGACCAGGCGCTAATTGCGGTACCGGAGGTTTCGCATTTAGGTTGGGGACATTGGTATACTCTCAGAGAGCTTGAATCCTCTACCAATGGATTTGCAGACGAGAATGTTATCGGCGAAGGTGGGTATGGAATTGTTTACCGTGGAGTTTTTGAAGACAATGCTTGTGTTGCTGTCAAGAATTTGCTCAATAACAGAGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTTGAAGCAATTGGACGCGTTAGGCACAAGAATTTAGTGAGATTGTTGGGTTATTGCGCTGAAGGAGCTCATAGGATGCTTGTTTATGAATATGTCAATAATGGAAACTTAGAACAATGGCTCCACGGAGACGTCGGGCCGATCAGTCCTCTTACTTGGGACATTCGAATGAATATAATCCTCGGAACCGCAAAAGGATTGACATATCTACACGAGGGGCTCGAGCCGAAGGTCGTTCATCGTGATATTAAGTCCAGCAACATTTTGCTCGACAAGCAGTGGAATCCGAAGGTCTCTGACTTTGGCTTAGCAAAGCTTCTTGGCTCGGAGAGAAGTTATGTCACTACCCGGGTGATGGGAACGTTCGGATATGTAGCCCCTGAATATGCTAGCACTGGAATGTTGAACGAAAGAAGCGATGTGTATAGTTTCGGGATTCTCATCATGGAGATCATCTCTGGACGGAATCCTGTCGACTATAGCCGTGCACCTGGCGAGGTGAATCTGGTCGAGTGGCTTAAAACAATGGTTACGAATCGGAACTCAGAGGGAGTTCTCGATTCGAAGTTGCCGGAGAAGCCTTCTTCACGAGCACTCAAACGAGCCCTTTTAGTAGCTTTACGGTGTGTGGATCCAAACTCTCAAAAGAGGCCGAAAATGGGGCACGTAATACACATGCTCGAGGCGGATGAGTTTCCTTTCAGAGACGACCGGAGAGCGGGACGAGAACTCGGACGATCCCAGCGGGAAAATCTGAGGGATCGTTTGATGGACAAAAGAGTGAGCGAATCCGGAGATAGTAGTGGGTATGAAAGCGGAGCTCAGATTCATCAGATTCTATGGAGAAAGCAAGAATCTGAAGACAAGTAA 1536 49.09 MSNYAFLNDQLSKKTSIFGLRLWVVLGICVGAAIVLVLFLVSLWFTSRRNNASKSKNSKSLTIPNVSKEIQEIRVDHSRSTTHPDPKIQLTANPDPLPETEALAIVALPEDENQAGWRKRIHIEIGKDHRISYPERVGGSSGEARSGDQALIAVPEVSHLGWGHWYTLRELESSTNGFADENVIGEGGYGIVYRGVFEDNACVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVNNGNLEQWLHGDVGPISPLTWDIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEIISGRNPVDYSRAPGEVNLVEWLKTMVTNRNSEGVLDSKLPEKPSSRALKRALLVALRCVDPNSQKRPKMGHVIHMLEADEFPFRDDRRAGRELGRSQRENLRDRLMDKRVSESGDSSGYESGAQIHQILWRKQESEDK 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2169428 2171580 - Bma020729.1 Bma05g00040 82124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00040 511 Pfam Protein kinase domain 179 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00040 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Bma05g00040 511 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524
Bma05g00040 511 PANTHER OS01G0323000 PROTEIN 5 496 - -
Bma05g00040 511 SUPERFAMILY Protein kinase-like (PK-like) 159 450 IPR011009 -
Bma05g00040 511 PANTHER RECEPTOR-LIKE KINASE PLANT 5 496 - -
Bma05g00040 511 MobiDBLite consensus disorder prediction 461 511 - -
Bma05g00040 511 Gene3D Phosphorylase Kinase; domain 1 155 253 - -
Bma05g00040 511 CDD STKc_IRAK 184 450 - -
Bma05g00040 511 SMART serkin_6 178 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00040 511 Gene3D Transferase(Phosphotransferase) domain 1 254 463 - -
Bma05g00040 511 ProSiteProfiles Protein kinase domain profile. 178 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma05g00040 511 MobiDBLite consensus disorder prediction 461 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01031 Bma-Chr2:51757241 Bma05g00040 Bma-Chr5:2169428 0 dispersed
Bma03g00549 Bma-Chr3:4513517 Bma05g00040 Bma-Chr5:2169428 0 dispersed
Bma05g00040 Bma-Chr5:2169428 Bma11g00819 Bma-Chr11:25499778 0 dispersed
Bma05g00040 Bma-Chr5:2169428 Bma15g00184 Bma-Chr15:1925429 5.39E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66488 PF00069 Pkinase 2.90E-47 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00040 - - csv:101203008 847.81