Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00041 ATGGCGGATCTGTACGGAACTTCTCCTTCTTCCACCACTGGTCTCTCCTCCGGCTCTGAAGATTTTTCTTCCTTTTTAAACCAGCATTTCAGTAATTCGTCGTCTCCCTATTCTTATGCTTCGTCTCCTTGCATGTCGTTGAAGGGCAAGTATTCGCGATTGCTTGATTCTCAGTCAGTAGGGCAGCCATTGCCCTCGTTCTCGCAGAAACAGGAGACTACCTCCGCTCCAGGATCTTCGAGCCTGGCGGTTTCCGCATCTGGTTTGAATTTTTCGGATCCTGGAAGTTTTTTCTCGGGTGACATCAAAGGAAAAGCAGCAAACGCGTTTTCTTTTGCCAGAGTTGAAGATTGTGACGCCAATGCGTCTTTGAAGAAAGGGAGGTTTTCGCCTGAAATTGATCTCGGCGATTTCAGTTGTGACAGCGAGAACGGTGCTGAGGTATCAAAACTTCTGTCAAATTCAATGGCGGCTAGAAGTTCATCCAAGCGAAGCAGAGCTGCAGAAGTCCACAATTTATCAGAGAAAAGGAGGAGGAGAAGGATTAATGAGAAAATGAAAGCCCTGCAGAACCTAATTCCAAATTCTAATAAGACGGATAAGGCTTCCATGCTAGATGACGCAATTGAATATTTAAAGCAGCTTCAGCTTCAAGTACAAATGTTATCTATGAGAAATGGATTTAGCTTGCATCCTTCGTGCTTACCAGGAAGAGTCCTGCAGCCTATGCAATTGCCCCAGTTGGGAATGAACTTTGATTCAGGAAATGCAATTCCAACTTCCATCAGAGAGTTAGAAACTCTTTTTGCAAATAAAGATTGTCCAATACCGTCTAACTTCAGCCTTTCCCACAAATGTAGTCTCTCCGATCAGCCAGTTGCCATTTCTACTGAAGCAAACAATAGTACTCCTGATAACTCGTTTAGATTTGGACAGCTTCAGGCATACTATGGACATTTTAATTTATCCCCTCATGCAGAGGATATCAGCAGGGACGCCACACCAAAACAACAACTGGATTGCTCTCAGACTGGGAAACACTCCAAAGAAAATGCTTTATAG 1062 43.97 MADLYGTSPSSTTGLSSGSEDFSSFLNQHFSNSSSPYSYASSPCMSLKGKYSRLLDSQSVGQPLPSFSQKQETTSAPGSSSLAVSASGLNFSDPGSFFSGDIKGKAANAFSFARVEDCDANASLKKGRFSPEIDLGDFSCDSENGAEVSKLLSNSMAARSSSKRSRAAEVHNLSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDDAIEYLKQLQLQVQMLSMRNGFSLHPSCLPGRVLQPMQLPQLGMNFDSGNAIPTSIRELETLFANKDCPIPSNFSLSHKCSLSDQPVAISTEANNSTPDNSFRFGQLQAYYGHFNLSPHAEDISRDATPKQQLDCSQTGKHSKENAL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2179225 2181322 - Bma020730.1 Bma05g00041 82125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00041 353 PANTHER TRANSCRIPTION FACTOR SPATULA-LIKE ISOFORM X1 136 348 - -
Bma05g00041 353 PANTHER TRANSCRIPTION FACTOR SPATULA-LIKE ISOFORM X1 1 113 - -
Bma05g00041 353 Gene3D - 161 226 IPR036638 GO:0046983
Bma05g00041 353 Coils Coil 172 192 - -
Bma05g00041 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Bma05g00041 353 MobiDBLite consensus disorder prediction 330 353 - -
Bma05g00041 353 CDD bHLH_AtPIF_like 166 228 - -
Bma05g00041 353 SMART finulus 172 221 IPR011598 GO:0046983
Bma05g00041 353 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Bma05g00041 353 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 136 348 IPR031066 -
Bma05g00041 353 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 113 IPR031066 -
Bma05g00041 353 MobiDBLite consensus disorder prediction 335 353 - -
Bma05g00041 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 226 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00041 - - - mcha:111004542 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00504 Bma-Chr4:4436374 Bma05g00041 Bma-Chr5:2179225 6.48E-07 dispersed
Bma05g00041 Bma-Chr5:2179225 Bma11g00821 Bma-Chr11:25575184 2.70E-34 dispersed
Bma05g00041 Bma-Chr5:2179225 Bma15g00708 Bma-Chr15:12858643 6.74E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57281 PF00010 HLH 6.10E-14 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00041 Bma_Chr05 FPKM 1.731372 1.366042 3.642764 3.988559 2.564561 2.874724 2.009045 11.378487 9.368878 8.617933