Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma05g00042 | ATGGGAGTAGGCATGAAGGTTCATCAATTCACACGTGGGTTTTGGGAGCTCGAACCACCCTCCCTCTCCCTCGCCTGCAAGCGTCTCCGTCCTCTCGCTCCGAAGCTTCAAACCAGCAATGACTCCACCATCTCCTCCTTCGATCTCAAGACCTTTATCAGACCAGACTCGGGCCCCAGACCAAACCCTTCTTCTTCGTTCTCCTCAGAAGACAAGAGAGATTTACTTTCTGTGGAGACGCTTCCTGGAGGGACAAGATGGAACCCGACTCAAGAACAGATTGGGATATTGGAGATGCTTTACAGGGGAGGCATGAGGACTCCTAATGCACAACAGATAGAACAAATCACAACCCAGCTAGGTAAATATGGCAAAATCGAAGGTAAAAATGTATTTTATTGGTTTCAGAACCACAAAGCCCGAGAAAGACAGAAGCAAAAGAGAAACAGTCTTGGTCTTTGCCATAGCCCAAGAATAGCTGTAGCAAATTCTAGGGTAGAGGGAGTAGAACATCAAAGAGAGGAAGATAGTTCGTTCAAGAGAAAGAACAGGAGCTGGGTATTTGAATGCTTGGAAGAAGAGATCATCAGCGTAAGCCATGAAGAAGAAGATCAAGGAGATGGAACTTTGGAGTTATTTCCATTACACCCAGAAGGTAGATGA | 663 | 46.15 | MGVGMKVHQFTRGFWELEPPSLSLACKRLRPLAPKLQTSNDSTISSFDLKTFIRPDSGPRPNPSSSFSSEDKRDLLSVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLCHSPRIAVANSRVEGVEHQREEDSSFKRKNRSWVFECLEEEIISVSHEEEDQGDGTLELFPLHPEGR | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2219801 | 2220620 | - | Bma031163 | Bma05g00042 | 82126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma05g00042 | 220 | ProSiteProfiles | 'Homeobox' domain profile. | 90 | 145 | IPR001356 | GO:0003677 | |
| Bma05g00042 | 220 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 5 | 220 | IPR044186 | GO:0003700|GO:0010067|GO:0010087|GO:0051301 | |
| Bma05g00042 | 220 | MobiDBLite | consensus disorder prediction | 200 | 220 | - | - | |
| Bma05g00042 | 220 | CDD | homeodomain | 85 | 146 | IPR001356 | GO:0003677 | |
| Bma05g00042 | 220 | SUPERFAMILY | Homeodomain-like | 83 | 150 | IPR009057 | - | |
| Bma05g00042 | 220 | Pfam | Homeodomain | 85 | 144 | IPR001356 | GO:0003677 | |
| Bma05g00042 | 220 | Gene3D | - | 84 | 151 | - | - | |
| Bma05g00042 | 220 | SMART | HOX_1 | 82 | 149 | IPR001356 | GO:0003677 | |
| Bma05g00042 | 220 | MobiDBLite | consensus disorder prediction | 51 | 73 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma01g00657 | Bma05g00042 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma05g00042 | Bma-Chr5:2219801 | Bma09g00020 | Bma-Chr9:447152 | 4.84E-23 | dispersed | |
| Bma06g00064 | Bma-Chr6:1029892 | Bma05g00042 | Bma-Chr5:2219801 | 3.91E-31 | transposed | |
| Bma06g00143 | Bma-Chr6:1885246 | Bma05g00042 | Bma-Chr5:2219801 | 2.98E-30 | transposed | |
| Bma07g00071 | Bma-Chr7:1530925 | Bma05g00042 | Bma-Chr5:2219801 | 2.06E-20 | transposed | |
| Bma08g00054 | Bma-Chr8:722377 | Bma05g00042 | Bma-Chr5:2219801 | 5.20E-29 | transposed | |
| Bma11g00125 | Bma-Chr11:1164645 | Bma05g00042 | Bma-Chr5:2219801 | 6.70E-33 | transposed | |
| Bma11g00142 | Bma-Chr11:1255416 | Bma05g00042 | Bma-Chr5:2219801 | 3.28E-28 | transposed | |
| Bma01g00657 | Bma-Chr1:5979233 | Bma05g00042 | Bma-Chr5:2219801 | 4.13E-107 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 57282 | PF00046 | Homeodomain | 6.70E-19 | CL0123 | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma05g00042 | - | - | twl:120000509 | 304.679 |