Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma05g00042 ATGGGAGTAGGCATGAAGGTTCATCAATTCACACGTGGGTTTTGGGAGCTCGAACCACCCTCCCTCTCCCTCGCCTGCAAGCGTCTCCGTCCTCTCGCTCCGAAGCTTCAAACCAGCAATGACTCCACCATCTCCTCCTTCGATCTCAAGACCTTTATCAGACCAGACTCGGGCCCCAGACCAAACCCTTCTTCTTCGTTCTCCTCAGAAGACAAGAGAGATTTACTTTCTGTGGAGACGCTTCCTGGAGGGACAAGATGGAACCCGACTCAAGAACAGATTGGGATATTGGAGATGCTTTACAGGGGAGGCATGAGGACTCCTAATGCACAACAGATAGAACAAATCACAACCCAGCTAGGTAAATATGGCAAAATCGAAGGTAAAAATGTATTTTATTGGTTTCAGAACCACAAAGCCCGAGAAAGACAGAAGCAAAAGAGAAACAGTCTTGGTCTTTGCCATAGCCCAAGAATAGCTGTAGCAAATTCTAGGGTAGAGGGAGTAGAACATCAAAGAGAGGAAGATAGTTCGTTCAAGAGAAAGAACAGGAGCTGGGTATTTGAATGCTTGGAAGAAGAGATCATCAGCGTAAGCCATGAAGAAGAAGATCAAGGAGATGGAACTTTGGAGTTATTTCCATTACACCCAGAAGGTAGATGA 663 46.15 MGVGMKVHQFTRGFWELEPPSLSLACKRLRPLAPKLQTSNDSTISSFDLKTFIRPDSGPRPNPSSSFSSEDKRDLLSVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLCHSPRIAVANSRVEGVEHQREEDSSFKRKNRSWVFECLEEEIISVSHEEEDQGDGTLELFPLHPEGR 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2219801 2220620 - Bma031163 Bma05g00042 82126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma05g00042 220 ProSiteProfiles 'Homeobox' domain profile. 90 145 IPR001356 GO:0003677
Bma05g00042 220 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 220 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Bma05g00042 220 MobiDBLite consensus disorder prediction 200 220 - -
Bma05g00042 220 CDD homeodomain 85 146 IPR001356 GO:0003677
Bma05g00042 220 SUPERFAMILY Homeodomain-like 83 150 IPR009057 -
Bma05g00042 220 Pfam Homeodomain 85 144 IPR001356 GO:0003677
Bma05g00042 220 Gene3D - 84 151 - -
Bma05g00042 220 SMART HOX_1 82 149 IPR001356 GO:0003677
Bma05g00042 220 MobiDBLite consensus disorder prediction 51 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma05g00042 - - - twl:120000509 304.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00657 Bma05g00042 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00042 Bma-Chr5:2219801 Bma09g00020 Bma-Chr9:447152 4.84E-23 dispersed
Bma06g00064 Bma-Chr6:1029892 Bma05g00042 Bma-Chr5:2219801 3.91E-31 transposed
Bma06g00143 Bma-Chr6:1885246 Bma05g00042 Bma-Chr5:2219801 2.98E-30 transposed
Bma07g00071 Bma-Chr7:1530925 Bma05g00042 Bma-Chr5:2219801 2.06E-20 transposed
Bma08g00054 Bma-Chr8:722377 Bma05g00042 Bma-Chr5:2219801 5.20E-29 transposed
Bma11g00125 Bma-Chr11:1164645 Bma05g00042 Bma-Chr5:2219801 6.70E-33 transposed
Bma11g00142 Bma-Chr11:1255416 Bma05g00042 Bma-Chr5:2219801 3.28E-28 transposed
Bma01g00657 Bma-Chr1:5979233 Bma05g00042 Bma-Chr5:2219801 4.13E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57282 PF00046 Homeodomain 6.70E-19 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma05g00042 Bma_Chr05 FPKM 6.353612 7.776278 8.20147 9.334219 6.973872 7.430755 7.2837 8.16542 7.853745 6.968439