Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma05g00047 | ATGGCTGAGCAAGGTAATTGCACGCGTCTCACGCGGGCGGCGAAGAAGAGAGCTGCGGCTGACGAGAATGTCGGGAGTAGTAAAAGAGTGGTTCTGGGAGAGATTCAGAACCTGTCTAACGTTGTAGTTCCGGGCAACCCAAATCCTCAAAAGCAGAAATCTGAGTCGAAGACGAAGGTAAACACGCCACTGACAATGACGTCTACCAGAAAGAAGCCGAAAACTACGTTGATGAGAAGTGGCAGTCCAGGATTGGAGAATACCCAAATTTGCGAAGCTTATGTCTTTGACATTTATGGGTACCTTCACAAGTTGGAGGAGAATCCAAAGAGAAGACCACTGCCTGATTACATTTCAAAGATTCAGAATGATATCAATGCTAGTATGAGAGGAATTTTAGTGGATTGGTTAATCGAAGTTTCGGAGGAATACAAGCTCGTTTCGGACACTCTGTACCTCTCCATTTCCTACATTGACAGATTCCTATCTGTGAGCCAACTCAACCGGCAAAAACTTCAGTTGCTCGGTGTTTCTGCGATGCTGGTTGCCTCAAAGTATGAAGAGATCACTTCACCTCAACGTGGAAGACTTCTGCTACATCACAGATAA | 609 | 45.48 | MAEQGNCTRLTRAAKKRAAADENVGSSKRVVLGEIQNLSNVVVPGNPNPQKQKSESKTKVNTPLTMTSTRKKPKTTLMRSGSPGLENTQICEAYVFDIYGYLHKLEENPKRRPLPDYISKIQNDINASMRGILVDWLIEVSEEYKLVSDTLYLSISYIDRFLSVSQLNRQKLQLLGVSAMLVASKYEEITSPQRGRLLLHHR | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2323966 | 2324908 | - | Bma020736.1 | Bma05g00047 | 82131 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma05g00047 | 202 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Bma05g00047 | 202 | MobiDBLite | consensus disorder prediction | 41 | 82 | - | - | |
| Bma05g00047 | 202 | CDD | CYCLIN | 129 | 189 | IPR013763 | - | |
| Bma05g00047 | 202 | ProSitePatterns | Cyclins signature. | 130 | 161 | IPR006671 | - | |
| Bma05g00047 | 202 | Pfam | Cyclin, N-terminal domain | 97 | 193 | IPR006671 | - | |
| Bma05g00047 | 202 | Gene3D | - | 113 | 194 | - | - | |
| Bma05g00047 | 202 | SUPERFAMILY | Cyclin-like | 86 | 196 | IPR036915 | - | |
| Bma05g00047 | 202 | PIRSF | Cyclin_A_B_D_E | 3 | 197 | IPR039361 | - | |
| Bma05g00047 | 202 | PANTHER | CYCLIN-A3-1-RELATED | 21 | 193 | - | - | |
| Bma05g00047 | 202 | SMART | cyclin_7 | 135 | 200 | IPR013763 | - | |
| Bma05g00047 | 202 | Gene3D | - | 97 | 112 | - | - | |
| Bma05g00047 | 202 | PANTHER | CYCLINS | 21 | 193 | IPR039361 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma04g00147 | Bma05g00047 | CCT | |
| Bma01g02257 | Bma05g00047 | CCT | |
| Bma04g00147 | Bma05g00047 | ECH | |
| Bma01g02257 | Bma05g00047 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma05g00047 | Bma-Chr5:2323966 | Bma04g00147 | Bma-Chr4:1283818 | 8.48E-40 | dispersed | |
| Bma01g02257 | Bma-Chr1:79747472 | Bma05g00047 | Bma-Chr5:2323966 | 1.22E-60 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma05g00047 | K06627 | - | pvy:116125667 | 215.698 |